Cargando…

PhycoCosm, a comparative algal genomics resource

Algae are a diverse, polyphyletic group of photosynthetic eukaryotes spanning nearly all eukaryotic lineages of life and collectively responsible for ∼50% of photosynthesis on Earth. Sequenced algal genomes, critical to understanding their complex biology, are growing in number and require efficient...

Descripción completa

Detalles Bibliográficos
Autores principales: Grigoriev, Igor V, Hayes, Richard D, Calhoun, Sara, Kamel, Bishoy, Wang, Alice, Ahrendt, Steven, Dusheyko, Sergey, Nikitin, Roman, Mondo, Stephen J, Salamov, Asaf, Shabalov, Igor, Kuo, Alan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779022/
https://www.ncbi.nlm.nih.gov/pubmed/33104790
http://dx.doi.org/10.1093/nar/gkaa898
_version_ 1783631246975303680
author Grigoriev, Igor V
Hayes, Richard D
Calhoun, Sara
Kamel, Bishoy
Wang, Alice
Ahrendt, Steven
Dusheyko, Sergey
Nikitin, Roman
Mondo, Stephen J
Salamov, Asaf
Shabalov, Igor
Kuo, Alan
author_facet Grigoriev, Igor V
Hayes, Richard D
Calhoun, Sara
Kamel, Bishoy
Wang, Alice
Ahrendt, Steven
Dusheyko, Sergey
Nikitin, Roman
Mondo, Stephen J
Salamov, Asaf
Shabalov, Igor
Kuo, Alan
author_sort Grigoriev, Igor V
collection PubMed
description Algae are a diverse, polyphyletic group of photosynthetic eukaryotes spanning nearly all eukaryotic lineages of life and collectively responsible for ∼50% of photosynthesis on Earth. Sequenced algal genomes, critical to understanding their complex biology, are growing in number and require efficient tools for analysis. PhycoCosm (https://phycocosm.jgi.doe.gov) is an algal multi-omics portal, developed by the US Department of Energy Joint Genome Institute to support analysis and distribution of algal genome sequences and other ‘omics’ data. PhycoCosm provides integration of genome sequence and annotation for >100 algal genomes with available multi-omics data and interactive web-based tools to enable algal research in bioenergy and the environment, encouraging community engagement and data exchange, and fostering new sequencing projects that will further these research goals.
format Online
Article
Text
id pubmed-7779022
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-77790222021-01-07 PhycoCosm, a comparative algal genomics resource Grigoriev, Igor V Hayes, Richard D Calhoun, Sara Kamel, Bishoy Wang, Alice Ahrendt, Steven Dusheyko, Sergey Nikitin, Roman Mondo, Stephen J Salamov, Asaf Shabalov, Igor Kuo, Alan Nucleic Acids Res Database Issue Algae are a diverse, polyphyletic group of photosynthetic eukaryotes spanning nearly all eukaryotic lineages of life and collectively responsible for ∼50% of photosynthesis on Earth. Sequenced algal genomes, critical to understanding their complex biology, are growing in number and require efficient tools for analysis. PhycoCosm (https://phycocosm.jgi.doe.gov) is an algal multi-omics portal, developed by the US Department of Energy Joint Genome Institute to support analysis and distribution of algal genome sequences and other ‘omics’ data. PhycoCosm provides integration of genome sequence and annotation for >100 algal genomes with available multi-omics data and interactive web-based tools to enable algal research in bioenergy and the environment, encouraging community engagement and data exchange, and fostering new sequencing projects that will further these research goals. Oxford University Press 2020-10-26 /pmc/articles/PMC7779022/ /pubmed/33104790 http://dx.doi.org/10.1093/nar/gkaa898 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Grigoriev, Igor V
Hayes, Richard D
Calhoun, Sara
Kamel, Bishoy
Wang, Alice
Ahrendt, Steven
Dusheyko, Sergey
Nikitin, Roman
Mondo, Stephen J
Salamov, Asaf
Shabalov, Igor
Kuo, Alan
PhycoCosm, a comparative algal genomics resource
title PhycoCosm, a comparative algal genomics resource
title_full PhycoCosm, a comparative algal genomics resource
title_fullStr PhycoCosm, a comparative algal genomics resource
title_full_unstemmed PhycoCosm, a comparative algal genomics resource
title_short PhycoCosm, a comparative algal genomics resource
title_sort phycocosm, a comparative algal genomics resource
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779022/
https://www.ncbi.nlm.nih.gov/pubmed/33104790
http://dx.doi.org/10.1093/nar/gkaa898
work_keys_str_mv AT grigorievigorv phycocosmacomparativealgalgenomicsresource
AT hayesrichardd phycocosmacomparativealgalgenomicsresource
AT calhounsara phycocosmacomparativealgalgenomicsresource
AT kamelbishoy phycocosmacomparativealgalgenomicsresource
AT wangalice phycocosmacomparativealgalgenomicsresource
AT ahrendtsteven phycocosmacomparativealgalgenomicsresource
AT dusheykosergey phycocosmacomparativealgalgenomicsresource
AT nikitinroman phycocosmacomparativealgalgenomicsresource
AT mondostephenj phycocosmacomparativealgalgenomicsresource
AT salamovasaf phycocosmacomparativealgalgenomicsresource
AT shabalovigor phycocosmacomparativealgalgenomicsresource
AT kuoalan phycocosmacomparativealgalgenomicsresource