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The international glycan repository GlyTouCan version 3.0

Glycans serve important roles in signaling events and cell-cell communication, and they are recognized by lectins, viruses and bacteria, playing a variety of roles in many biological processes. However, there was no system to organize the plethora of glycan-related data in the literature. Thus GlyTo...

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Autores principales: Fujita, Akihiro, Aoki, Nobuyuki P, Shinmachi, Daisuke, Matsubara, Masaaki, Tsuchiya, Shinichiro, Shiota, Masaaki, Ono, Tamiko, Yamada, Issaku, Aoki-Kinoshita, Kiyoko F
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779025/
https://www.ncbi.nlm.nih.gov/pubmed/33125071
http://dx.doi.org/10.1093/nar/gkaa947
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author Fujita, Akihiro
Aoki, Nobuyuki P
Shinmachi, Daisuke
Matsubara, Masaaki
Tsuchiya, Shinichiro
Shiota, Masaaki
Ono, Tamiko
Yamada, Issaku
Aoki-Kinoshita, Kiyoko F
author_facet Fujita, Akihiro
Aoki, Nobuyuki P
Shinmachi, Daisuke
Matsubara, Masaaki
Tsuchiya, Shinichiro
Shiota, Masaaki
Ono, Tamiko
Yamada, Issaku
Aoki-Kinoshita, Kiyoko F
author_sort Fujita, Akihiro
collection PubMed
description Glycans serve important roles in signaling events and cell-cell communication, and they are recognized by lectins, viruses and bacteria, playing a variety of roles in many biological processes. However, there was no system to organize the plethora of glycan-related data in the literature. Thus GlyTouCan (https://glytoucan.org) was developed as the international glycan repository, allowing researchers to assign accession numbers to glycans. This also aided in the integration of glycan data across various databases. GlyTouCan assigns accession numbers to glycans which are defined as sets of monosaccharides, which may or may not be characterized with linkage information. GlyTouCan was developed to be able to recognize any level of ambiguity in glycans and uniquely assign accession numbers to each of them, regardless of the input text format. In this manuscript, we describe the latest update to GlyTouCan in version 3.0, its usage, and plans for future development.
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spelling pubmed-77790252021-01-07 The international glycan repository GlyTouCan version 3.0 Fujita, Akihiro Aoki, Nobuyuki P Shinmachi, Daisuke Matsubara, Masaaki Tsuchiya, Shinichiro Shiota, Masaaki Ono, Tamiko Yamada, Issaku Aoki-Kinoshita, Kiyoko F Nucleic Acids Res Database Issue Glycans serve important roles in signaling events and cell-cell communication, and they are recognized by lectins, viruses and bacteria, playing a variety of roles in many biological processes. However, there was no system to organize the plethora of glycan-related data in the literature. Thus GlyTouCan (https://glytoucan.org) was developed as the international glycan repository, allowing researchers to assign accession numbers to glycans. This also aided in the integration of glycan data across various databases. GlyTouCan assigns accession numbers to glycans which are defined as sets of monosaccharides, which may or may not be characterized with linkage information. GlyTouCan was developed to be able to recognize any level of ambiguity in glycans and uniquely assign accession numbers to each of them, regardless of the input text format. In this manuscript, we describe the latest update to GlyTouCan in version 3.0, its usage, and plans for future development. Oxford University Press 2020-10-30 /pmc/articles/PMC7779025/ /pubmed/33125071 http://dx.doi.org/10.1093/nar/gkaa947 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Fujita, Akihiro
Aoki, Nobuyuki P
Shinmachi, Daisuke
Matsubara, Masaaki
Tsuchiya, Shinichiro
Shiota, Masaaki
Ono, Tamiko
Yamada, Issaku
Aoki-Kinoshita, Kiyoko F
The international glycan repository GlyTouCan version 3.0
title The international glycan repository GlyTouCan version 3.0
title_full The international glycan repository GlyTouCan version 3.0
title_fullStr The international glycan repository GlyTouCan version 3.0
title_full_unstemmed The international glycan repository GlyTouCan version 3.0
title_short The international glycan repository GlyTouCan version 3.0
title_sort international glycan repository glytoucan version 3.0
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779025/
https://www.ncbi.nlm.nih.gov/pubmed/33125071
http://dx.doi.org/10.1093/nar/gkaa947
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