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The international glycan repository GlyTouCan version 3.0
Glycans serve important roles in signaling events and cell-cell communication, and they are recognized by lectins, viruses and bacteria, playing a variety of roles in many biological processes. However, there was no system to organize the plethora of glycan-related data in the literature. Thus GlyTo...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779025/ https://www.ncbi.nlm.nih.gov/pubmed/33125071 http://dx.doi.org/10.1093/nar/gkaa947 |
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author | Fujita, Akihiro Aoki, Nobuyuki P Shinmachi, Daisuke Matsubara, Masaaki Tsuchiya, Shinichiro Shiota, Masaaki Ono, Tamiko Yamada, Issaku Aoki-Kinoshita, Kiyoko F |
author_facet | Fujita, Akihiro Aoki, Nobuyuki P Shinmachi, Daisuke Matsubara, Masaaki Tsuchiya, Shinichiro Shiota, Masaaki Ono, Tamiko Yamada, Issaku Aoki-Kinoshita, Kiyoko F |
author_sort | Fujita, Akihiro |
collection | PubMed |
description | Glycans serve important roles in signaling events and cell-cell communication, and they are recognized by lectins, viruses and bacteria, playing a variety of roles in many biological processes. However, there was no system to organize the plethora of glycan-related data in the literature. Thus GlyTouCan (https://glytoucan.org) was developed as the international glycan repository, allowing researchers to assign accession numbers to glycans. This also aided in the integration of glycan data across various databases. GlyTouCan assigns accession numbers to glycans which are defined as sets of monosaccharides, which may or may not be characterized with linkage information. GlyTouCan was developed to be able to recognize any level of ambiguity in glycans and uniquely assign accession numbers to each of them, regardless of the input text format. In this manuscript, we describe the latest update to GlyTouCan in version 3.0, its usage, and plans for future development. |
format | Online Article Text |
id | pubmed-7779025 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-77790252021-01-07 The international glycan repository GlyTouCan version 3.0 Fujita, Akihiro Aoki, Nobuyuki P Shinmachi, Daisuke Matsubara, Masaaki Tsuchiya, Shinichiro Shiota, Masaaki Ono, Tamiko Yamada, Issaku Aoki-Kinoshita, Kiyoko F Nucleic Acids Res Database Issue Glycans serve important roles in signaling events and cell-cell communication, and they are recognized by lectins, viruses and bacteria, playing a variety of roles in many biological processes. However, there was no system to organize the plethora of glycan-related data in the literature. Thus GlyTouCan (https://glytoucan.org) was developed as the international glycan repository, allowing researchers to assign accession numbers to glycans. This also aided in the integration of glycan data across various databases. GlyTouCan assigns accession numbers to glycans which are defined as sets of monosaccharides, which may or may not be characterized with linkage information. GlyTouCan was developed to be able to recognize any level of ambiguity in glycans and uniquely assign accession numbers to each of them, regardless of the input text format. In this manuscript, we describe the latest update to GlyTouCan in version 3.0, its usage, and plans for future development. Oxford University Press 2020-10-30 /pmc/articles/PMC7779025/ /pubmed/33125071 http://dx.doi.org/10.1093/nar/gkaa947 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Fujita, Akihiro Aoki, Nobuyuki P Shinmachi, Daisuke Matsubara, Masaaki Tsuchiya, Shinichiro Shiota, Masaaki Ono, Tamiko Yamada, Issaku Aoki-Kinoshita, Kiyoko F The international glycan repository GlyTouCan version 3.0 |
title | The international glycan repository GlyTouCan version 3.0 |
title_full | The international glycan repository GlyTouCan version 3.0 |
title_fullStr | The international glycan repository GlyTouCan version 3.0 |
title_full_unstemmed | The international glycan repository GlyTouCan version 3.0 |
title_short | The international glycan repository GlyTouCan version 3.0 |
title_sort | international glycan repository glytoucan version 3.0 |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779025/ https://www.ncbi.nlm.nih.gov/pubmed/33125071 http://dx.doi.org/10.1093/nar/gkaa947 |
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