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Mouse Genome Database (MGD): Knowledgebase for mouse–human comparative biology

The Mouse Genome Database (MGD; http://www.informatics.jax.org) is the community model organism knowledgebase for the laboratory mouse, a widely used animal model for comparative studies of the genetic and genomic basis for human health and disease. MGD is the authoritative source for biological ref...

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Detalles Bibliográficos
Autores principales: Blake, Judith A, Baldarelli, Richard, Kadin, James A, Richardson, Joel E, Smith, Cynthia L, Bult, Carol J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779030/
https://www.ncbi.nlm.nih.gov/pubmed/33231642
http://dx.doi.org/10.1093/nar/gkaa1083
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author Blake, Judith A
Baldarelli, Richard
Kadin, James A
Richardson, Joel E
Smith, Cynthia L
Bult, Carol J
author_facet Blake, Judith A
Baldarelli, Richard
Kadin, James A
Richardson, Joel E
Smith, Cynthia L
Bult, Carol J
author_sort Blake, Judith A
collection PubMed
description The Mouse Genome Database (MGD; http://www.informatics.jax.org) is the community model organism knowledgebase for the laboratory mouse, a widely used animal model for comparative studies of the genetic and genomic basis for human health and disease. MGD is the authoritative source for biological reference data related to mouse genes, gene functions, phenotypes and mouse models of human disease. MGD is the primary source for official gene, allele, and mouse strain nomenclature based on the guidelines set by the International Committee on Standardized Nomenclature for Mice. MGD’s biocuration scientists curate information from the biomedical literature and from large and small datasets contributed directly by investigators. In this report we describe significant enhancements to the content and interfaces at MGD, including (i) improvements in the Multi Genome Viewer for exploring the genomes of multiple mouse strains, (ii) inclusion of many more mouse strains and new mouse strain pages with extended query options and (iii) integration of extensive data about mouse strain variants. We also describe improvements to the efficiency of literature curation processes and the implementation of an information portal focused on mouse models and genes for the study of COVID-19.
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spelling pubmed-77790302021-01-07 Mouse Genome Database (MGD): Knowledgebase for mouse–human comparative biology Blake, Judith A Baldarelli, Richard Kadin, James A Richardson, Joel E Smith, Cynthia L Bult, Carol J Nucleic Acids Res Database Issue The Mouse Genome Database (MGD; http://www.informatics.jax.org) is the community model organism knowledgebase for the laboratory mouse, a widely used animal model for comparative studies of the genetic and genomic basis for human health and disease. MGD is the authoritative source for biological reference data related to mouse genes, gene functions, phenotypes and mouse models of human disease. MGD is the primary source for official gene, allele, and mouse strain nomenclature based on the guidelines set by the International Committee on Standardized Nomenclature for Mice. MGD’s biocuration scientists curate information from the biomedical literature and from large and small datasets contributed directly by investigators. In this report we describe significant enhancements to the content and interfaces at MGD, including (i) improvements in the Multi Genome Viewer for exploring the genomes of multiple mouse strains, (ii) inclusion of many more mouse strains and new mouse strain pages with extended query options and (iii) integration of extensive data about mouse strain variants. We also describe improvements to the efficiency of literature curation processes and the implementation of an information portal focused on mouse models and genes for the study of COVID-19. Oxford University Press 2020-11-24 /pmc/articles/PMC7779030/ /pubmed/33231642 http://dx.doi.org/10.1093/nar/gkaa1083 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Blake, Judith A
Baldarelli, Richard
Kadin, James A
Richardson, Joel E
Smith, Cynthia L
Bult, Carol J
Mouse Genome Database (MGD): Knowledgebase for mouse–human comparative biology
title Mouse Genome Database (MGD): Knowledgebase for mouse–human comparative biology
title_full Mouse Genome Database (MGD): Knowledgebase for mouse–human comparative biology
title_fullStr Mouse Genome Database (MGD): Knowledgebase for mouse–human comparative biology
title_full_unstemmed Mouse Genome Database (MGD): Knowledgebase for mouse–human comparative biology
title_short Mouse Genome Database (MGD): Knowledgebase for mouse–human comparative biology
title_sort mouse genome database (mgd): knowledgebase for mouse–human comparative biology
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779030/
https://www.ncbi.nlm.nih.gov/pubmed/33231642
http://dx.doi.org/10.1093/nar/gkaa1083
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