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FlyBase: updates to the Drosophila melanogaster knowledge base

FlyBase (flybase.org) is an essential online database for researchers using Drosophila melanogaster as a model organism, facilitating access to a diverse array of information that includes genetic, molecular, genomic and reagent resources. Here, we describe the introduction of several new features a...

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Autores principales: Larkin, Aoife, Marygold, Steven J, Antonazzo, Giulia, Attrill, Helen, dos Santos, Gilberto, Garapati, Phani V, Goodman, Joshua L, Gramates, L Sian, Millburn, Gillian, Strelets, Victor B, Tabone, Christopher J, Thurmond, Jim
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779046/
https://www.ncbi.nlm.nih.gov/pubmed/33219682
http://dx.doi.org/10.1093/nar/gkaa1026
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author Larkin, Aoife
Marygold, Steven J
Antonazzo, Giulia
Attrill, Helen
dos Santos, Gilberto
Garapati, Phani V
Goodman, Joshua L
Gramates, L Sian
Millburn, Gillian
Strelets, Victor B
Tabone, Christopher J
Thurmond, Jim
author_facet Larkin, Aoife
Marygold, Steven J
Antonazzo, Giulia
Attrill, Helen
dos Santos, Gilberto
Garapati, Phani V
Goodman, Joshua L
Gramates, L Sian
Millburn, Gillian
Strelets, Victor B
Tabone, Christopher J
Thurmond, Jim
author_sort Larkin, Aoife
collection PubMed
description FlyBase (flybase.org) is an essential online database for researchers using Drosophila melanogaster as a model organism, facilitating access to a diverse array of information that includes genetic, molecular, genomic and reagent resources. Here, we describe the introduction of several new features at FlyBase, including Pathway Reports, paralog information, disease models based on orthology, customizable tables within reports and overview displays (‘ribbons’) of expression and disease data. We also describe a variety of recent important updates, including incorporation of a developmental proteome, upgrades to the GAL4 search tab, additional Experimental Tool Reports, migration to JBrowse for genome browsing and improvements to batch queries/downloads and the Fast-Track Your Paper tool.
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spelling pubmed-77790462021-01-07 FlyBase: updates to the Drosophila melanogaster knowledge base Larkin, Aoife Marygold, Steven J Antonazzo, Giulia Attrill, Helen dos Santos, Gilberto Garapati, Phani V Goodman, Joshua L Gramates, L Sian Millburn, Gillian Strelets, Victor B Tabone, Christopher J Thurmond, Jim Nucleic Acids Res Database Issue FlyBase (flybase.org) is an essential online database for researchers using Drosophila melanogaster as a model organism, facilitating access to a diverse array of information that includes genetic, molecular, genomic and reagent resources. Here, we describe the introduction of several new features at FlyBase, including Pathway Reports, paralog information, disease models based on orthology, customizable tables within reports and overview displays (‘ribbons’) of expression and disease data. We also describe a variety of recent important updates, including incorporation of a developmental proteome, upgrades to the GAL4 search tab, additional Experimental Tool Reports, migration to JBrowse for genome browsing and improvements to batch queries/downloads and the Fast-Track Your Paper tool. Oxford University Press 2020-11-21 /pmc/articles/PMC7779046/ /pubmed/33219682 http://dx.doi.org/10.1093/nar/gkaa1026 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Larkin, Aoife
Marygold, Steven J
Antonazzo, Giulia
Attrill, Helen
dos Santos, Gilberto
Garapati, Phani V
Goodman, Joshua L
Gramates, L Sian
Millburn, Gillian
Strelets, Victor B
Tabone, Christopher J
Thurmond, Jim
FlyBase: updates to the Drosophila melanogaster knowledge base
title FlyBase: updates to the Drosophila melanogaster knowledge base
title_full FlyBase: updates to the Drosophila melanogaster knowledge base
title_fullStr FlyBase: updates to the Drosophila melanogaster knowledge base
title_full_unstemmed FlyBase: updates to the Drosophila melanogaster knowledge base
title_short FlyBase: updates to the Drosophila melanogaster knowledge base
title_sort flybase: updates to the drosophila melanogaster knowledge base
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779046/
https://www.ncbi.nlm.nih.gov/pubmed/33219682
http://dx.doi.org/10.1093/nar/gkaa1026
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