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NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants
NONCODE (http://www.noncode.org/) is a comprehensive database of collection and annotation of noncoding RNAs, especially long non-coding RNAs (lncRNAs) in animals. NONCODEV6 is dedicated to providing the full scope of lncRNAs across plants and animals. The number of lncRNAs in NONCODEV6 has increase...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779048/ https://www.ncbi.nlm.nih.gov/pubmed/33196801 http://dx.doi.org/10.1093/nar/gkaa1046 |
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author | Zhao, Lianhe Wang, Jiajia Li, Yanyan Song, Tingrui Wu, Yang Fang, Shuangsang Bu, Dechao Li, Hui Sun, Liang Pei, Dong Zheng, Yu Huang, Jianqin Xu, Mingqing Chen, Runsheng Zhao, Yi He, Shunmin |
author_facet | Zhao, Lianhe Wang, Jiajia Li, Yanyan Song, Tingrui Wu, Yang Fang, Shuangsang Bu, Dechao Li, Hui Sun, Liang Pei, Dong Zheng, Yu Huang, Jianqin Xu, Mingqing Chen, Runsheng Zhao, Yi He, Shunmin |
author_sort | Zhao, Lianhe |
collection | PubMed |
description | NONCODE (http://www.noncode.org/) is a comprehensive database of collection and annotation of noncoding RNAs, especially long non-coding RNAs (lncRNAs) in animals. NONCODEV6 is dedicated to providing the full scope of lncRNAs across plants and animals. The number of lncRNAs in NONCODEV6 has increased from 548 640 to 644 510 since the last update in 2017. The number of human lncRNAs has increased from 172 216 to 173 112. The number of mouse lncRNAs increased from 131 697 to 131 974. The number of plant lncRNAs is 94 697. The relationship between lncRNAs in human and cancer were updated with transcriptome sequencing profiles. Three important new features were also introduced in NONCODEV6: (i) updated human lncRNA-disease relationships, especially cancer; (ii) lncRNA annotations with tissue expression profiles and predicted function in five common plants; iii) lncRNAs conservation annotation at transcript level for 23 plant species. NONCODEV6 is accessible through http://www.noncode.org/. |
format | Online Article Text |
id | pubmed-7779048 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-77790482021-01-07 NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants Zhao, Lianhe Wang, Jiajia Li, Yanyan Song, Tingrui Wu, Yang Fang, Shuangsang Bu, Dechao Li, Hui Sun, Liang Pei, Dong Zheng, Yu Huang, Jianqin Xu, Mingqing Chen, Runsheng Zhao, Yi He, Shunmin Nucleic Acids Res Database Issue NONCODE (http://www.noncode.org/) is a comprehensive database of collection and annotation of noncoding RNAs, especially long non-coding RNAs (lncRNAs) in animals. NONCODEV6 is dedicated to providing the full scope of lncRNAs across plants and animals. The number of lncRNAs in NONCODEV6 has increased from 548 640 to 644 510 since the last update in 2017. The number of human lncRNAs has increased from 172 216 to 173 112. The number of mouse lncRNAs increased from 131 697 to 131 974. The number of plant lncRNAs is 94 697. The relationship between lncRNAs in human and cancer were updated with transcriptome sequencing profiles. Three important new features were also introduced in NONCODEV6: (i) updated human lncRNA-disease relationships, especially cancer; (ii) lncRNA annotations with tissue expression profiles and predicted function in five common plants; iii) lncRNAs conservation annotation at transcript level for 23 plant species. NONCODEV6 is accessible through http://www.noncode.org/. Oxford University Press 2020-11-16 /pmc/articles/PMC7779048/ /pubmed/33196801 http://dx.doi.org/10.1093/nar/gkaa1046 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Database Issue Zhao, Lianhe Wang, Jiajia Li, Yanyan Song, Tingrui Wu, Yang Fang, Shuangsang Bu, Dechao Li, Hui Sun, Liang Pei, Dong Zheng, Yu Huang, Jianqin Xu, Mingqing Chen, Runsheng Zhao, Yi He, Shunmin NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants |
title | NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants |
title_full | NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants |
title_fullStr | NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants |
title_full_unstemmed | NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants |
title_short | NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants |
title_sort | noncodev6: an updated database dedicated to long non-coding rna annotation in both animals and plants |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779048/ https://www.ncbi.nlm.nih.gov/pubmed/33196801 http://dx.doi.org/10.1093/nar/gkaa1046 |
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