Cargando…

RJunBase: a database of RNA splice junctions in human normal and cancerous tissues

Splicing is an essential step of RNA processing for multi-exon genes, in which introns are removed from a precursor RNA, thereby producing mature RNAs containing splice junctions. Here, we develope the RJunBase (www.RJunBase.org), a web-accessible database of three types of RNA splice junctions (lin...

Descripción completa

Detalles Bibliográficos
Autores principales:	Li, Qin, Lai, Hongyan, Li, Yuchen, Chen, Bing, Chen, Siyuan, Li, Yan, Huang, Zhaohui, Meng, Zhiqiang, Wang, Peng, Hu, Zhixiang, Huang, Shenglin
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2020
Materias:	Database Issue
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779070/ https://www.ncbi.nlm.nih.gov/pubmed/33179749 http://dx.doi.org/10.1093/nar/gkaa1056

Ejemplares similares

exoRBase 2.0: an atlas of mRNA, lncRNA and circRNA in extracellular vesicles from human biofluids
por: Lai, Hongyan, et al.
Publicado: (2021)

exoRBase: a database of circRNA, lncRNA and mRNA in human blood exosomes
por: Li, Shengli, et al.
Publicado: (2018)

OncoSplicing: an updated database for clinically relevant alternative splicing in 33 human cancers
por: Zhang, Yangjun, et al.
Publicado: (2021)

MeDAS: a Metazoan Developmental Alternative Splicing database
por: Li, Zhidan, et al.
Publicado: (2020)

JuncDB: an exon–exon junction database
por: Chorev, Michal, et al.
Publicado: (2016)

CancerSplicingQTL: a database for genome-wide identification of splicing QTLs in human cancer
por: Tian, Jianbo, et al.
Publicado: (2019)

SPENCER: a comprehensive database for small peptides encoded by noncoding RNAs in cancer patients
por: Luo, Xiaotong, et al.
Publicado: (2021)

DSMNC: a database of somatic mutations in normal cells
por: Miao, Xuexia, et al.
Publicado: (2019)

RPS: a comprehensive database of RNAs involved in liquid–liquid phase separation
por: Liu, Mengni, et al.
Publicado: (2021)

RMVar: an updated database of functional variants involved in RNA modifications
por: Luo, Xiaotong, et al.
Publicado: (2020)

RM2Target: a comprehensive database for targets of writers, erasers and readers of RNA modifications
por: Bao, Xiaoqiong, et al.
Publicado: (2022)

MetazExp: a database for gene expression and alternative splicing profiles and their analyses based on 53 615 public RNA-seq samples in 72 metazoan species
por: Liu, Jinding, et al.
Publicado: (2021)

Ribocentre: a database of ribozymes
por: Deng, Jie, et al.
Publicado: (2022)

ZOVER: the database of zoonotic and vector-borne viruses
por: Zhou, Siyu, et al.
Publicado: (2021)

LIRBase: a comprehensive database of long inverted repeats in eukaryotic genomes
por: Jia, Lihua, et al.
Publicado: (2021)

ASlive: a database for alternative splicing atlas in livestock animals
por: Liu, Jinding, et al.
Publicado: (2020)

SomaMutDB: a database of somatic mutations in normal human tissues
por: Sun, Shixiang, et al.
Publicado: (2021)

PROTAC-DB 2.0: an updated database of PROTACs
por: Weng, Gaoqi, et al.
Publicado: (2022)

CRISPRlnc: a manually curated database of validated sgRNAs for lncRNAs
por: Chen, Wen, et al.
Publicado: (2019)

CovalentInDB: a comprehensive database facilitating the discovery of covalent inhibitors
por: Du, Hongyan, et al.
Publicado: (2020)

ASCancer Atlas: a comprehensive knowledgebase of alternative splicing in human cancers
por: Wu, Song, et al.
Publicado: (2022)

mirDNMR: a gene-centered database of background de novo mutation rates in human
por: Jiang, Yi, et al.
Publicado: (2017)

Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome profiling in cancer cells
por: Li, Jian-Rong, et al.
Publicado: (2016)

CMDB: the comprehensive population genome variation database of China
por: Li, Zhichao, et al.
Publicado: (2022)

PhaSepDB: a database of liquid–liquid phase separation related proteins
por: You, Kaiqiang, et al.
Publicado: (2020)

CircNet: a database of circular RNAs derived from transcriptome sequencing data
por: Liu, Yu-Chen, et al.
Publicado: (2016)

GotEnzymes: an extensive database of enzyme parameter predictions
por: Li, Feiran, et al.
Publicado: (2022)

APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals
por: You, Leiming, et al.
Publicado: (2014)

m6AVar: a database of functional variants involved in m(6)A modification
por: Zheng, Yueyuan, et al.
Publicado: (2018)

CuAS: a database of annotated transcripts generated by alternative splicing in cucumbers
por: Sun, Ying, et al.
Publicado: (2020)

LLPSDB: a database of proteins undergoing liquid–liquid phase separation in vitro
por: Li, Qian, et al.
Publicado: (2020)

Plant editosome database: a curated database of RNA editosome in plants
por: Li, Man, et al.
Publicado: (2019)

BIC: a database for the transcriptional landscape of bacteria in cancer
por: Chen, Kai-Pu, et al.
Publicado: (2022)

CellTracer: a comprehensive database to dissect the causative multilevel interplay contributing to cell development trajectories
por: Guo, Qiuyan, et al.
Publicado: (2022)

CircNet 2.0: an updated database for exploring circular RNA regulatory networks in cancers
por: Chen, Yigang, et al.
Publicado: (2021)

ImmuCo: a database of gene co-expression in immune cells
por: Wang, Pingzhang, et al.
Publicado: (2014)

EWASdb: epigenome-wide association study database
por: liu, Di, et al.
Publicado: (2019)

CMPD: cancer mutant proteome database
por: Huang, Po-Jung, et al.
Publicado: (2014)

The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database
por: Rawlings, Neil D, et al.
Publicado: (2018)

CRAMdb: a comprehensive database for composition and roles of microbiome in animals
por: Lei, Bingbing, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_g491gghu8s2kj8hjg1hu1riokc