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Gut Microbiotic Features Aiding the Diagnosis of Acute Ischemic Stroke
Increasing evidence suggests that features of the gut microbiota correlate with ischemic stroke. However, the specific characteristics of the gut microbiota in patients suffering different types of ischemic stroke, or recovering from such strokes, have rarely been studied, and potential microbiotic...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779606/ https://www.ncbi.nlm.nih.gov/pubmed/33409158 http://dx.doi.org/10.3389/fcimb.2020.587284 |
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author | Xiang, Lei Lou, Yanfeng Liu, Lingyu Liu, Yuanling Zhang, Weizheng Deng, Jianxin Guan, Yubin She, Miaoqin You, Xinchao Liu, Minqi Li, Hongwei Xu, Xiaosong Liu, Fang Cai, Xiangsheng |
author_facet | Xiang, Lei Lou, Yanfeng Liu, Lingyu Liu, Yuanling Zhang, Weizheng Deng, Jianxin Guan, Yubin She, Miaoqin You, Xinchao Liu, Minqi Li, Hongwei Xu, Xiaosong Liu, Fang Cai, Xiangsheng |
author_sort | Xiang, Lei |
collection | PubMed |
description | Increasing evidence suggests that features of the gut microbiota correlate with ischemic stroke. However, the specific characteristics of the gut microbiota in patients suffering different types of ischemic stroke, or recovering from such strokes, have rarely been studied, and potential microbiotic predictors of different types of stroke have seldom been analyzed. We subjected fecal specimens from patients with lacunar or non-lacunar acute ischemic infarctions, and those recovering from such strokes, to bacterial 16S rRNA sequencing and compared the results to those of healthy volunteers. We identified microbial markers of different types of ischemic stroke and verified that these were of diagnostic utility. Patients with two types of ischemic stroke, and those recovering from ischemic stroke, exhibited significant shifts in microbiotic diversities compared to healthy subjects. Cluster of Orthologous Groups of Proteins (COG) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses revealed reduced metabolic and transport-related pathway activities in ischemic stroke patients. We performed fivefold cross-validation using a Random Forest model to identify two optimal bacterial species (operational taxonomic units; OTUs) serving as markers of lacunar infarction; these were Lachnospiraceae (OTU_45) and Bacteroides (OTU_4), and the areas under the receiver operating characteristic curves (AUCs under the ROCs) were 0.881 and 0.872 respectively. In terms of non-lacunar acute ischemic infarction detection, the two optimal species were Bilophila (OTU_330) and Lachnospiraceae (OTU_338); the AUCs under the ROCs were 0.985 and 0.929 respectively. In post-ischemic stroke patients, the three optimal species were Pseudomonas (OTU_35), Sphingomonadaceae (OTU_303), and Akkermansia (OTU_9); the AUCs under the ROCs were 1, 0.897, and 0.846 respectively. Notably, the gut microbial markers were of considerable value for utility when diagnosing lacunar infarction, non-lacunar acute ischemic infarction, and post-ischemic stroke. This study is the first to characterize the gut microbiotic profiles of patients with lacunar or non-lacunar, acute ischemic strokes, and those recovering from stroke, and to identify microbiotic predictors of such strokes. |
format | Online Article Text |
id | pubmed-7779606 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-77796062021-01-05 Gut Microbiotic Features Aiding the Diagnosis of Acute Ischemic Stroke Xiang, Lei Lou, Yanfeng Liu, Lingyu Liu, Yuanling Zhang, Weizheng Deng, Jianxin Guan, Yubin She, Miaoqin You, Xinchao Liu, Minqi Li, Hongwei Xu, Xiaosong Liu, Fang Cai, Xiangsheng Front Cell Infect Microbiol Cellular and Infection Microbiology Increasing evidence suggests that features of the gut microbiota correlate with ischemic stroke. However, the specific characteristics of the gut microbiota in patients suffering different types of ischemic stroke, or recovering from such strokes, have rarely been studied, and potential microbiotic predictors of different types of stroke have seldom been analyzed. We subjected fecal specimens from patients with lacunar or non-lacunar acute ischemic infarctions, and those recovering from such strokes, to bacterial 16S rRNA sequencing and compared the results to those of healthy volunteers. We identified microbial markers of different types of ischemic stroke and verified that these were of diagnostic utility. Patients with two types of ischemic stroke, and those recovering from ischemic stroke, exhibited significant shifts in microbiotic diversities compared to healthy subjects. Cluster of Orthologous Groups of Proteins (COG) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses revealed reduced metabolic and transport-related pathway activities in ischemic stroke patients. We performed fivefold cross-validation using a Random Forest model to identify two optimal bacterial species (operational taxonomic units; OTUs) serving as markers of lacunar infarction; these were Lachnospiraceae (OTU_45) and Bacteroides (OTU_4), and the areas under the receiver operating characteristic curves (AUCs under the ROCs) were 0.881 and 0.872 respectively. In terms of non-lacunar acute ischemic infarction detection, the two optimal species were Bilophila (OTU_330) and Lachnospiraceae (OTU_338); the AUCs under the ROCs were 0.985 and 0.929 respectively. In post-ischemic stroke patients, the three optimal species were Pseudomonas (OTU_35), Sphingomonadaceae (OTU_303), and Akkermansia (OTU_9); the AUCs under the ROCs were 1, 0.897, and 0.846 respectively. Notably, the gut microbial markers were of considerable value for utility when diagnosing lacunar infarction, non-lacunar acute ischemic infarction, and post-ischemic stroke. This study is the first to characterize the gut microbiotic profiles of patients with lacunar or non-lacunar, acute ischemic strokes, and those recovering from stroke, and to identify microbiotic predictors of such strokes. Frontiers Media S.A. 2020-12-21 /pmc/articles/PMC7779606/ /pubmed/33409158 http://dx.doi.org/10.3389/fcimb.2020.587284 Text en Copyright © 2020 Xiang, Lou, Liu, Liu, Zhang, Deng, Guan, She, You, Liu, Li, Xu, Liu and Cai http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cellular and Infection Microbiology Xiang, Lei Lou, Yanfeng Liu, Lingyu Liu, Yuanling Zhang, Weizheng Deng, Jianxin Guan, Yubin She, Miaoqin You, Xinchao Liu, Minqi Li, Hongwei Xu, Xiaosong Liu, Fang Cai, Xiangsheng Gut Microbiotic Features Aiding the Diagnosis of Acute Ischemic Stroke |
title | Gut Microbiotic Features Aiding the Diagnosis of Acute Ischemic Stroke |
title_full | Gut Microbiotic Features Aiding the Diagnosis of Acute Ischemic Stroke |
title_fullStr | Gut Microbiotic Features Aiding the Diagnosis of Acute Ischemic Stroke |
title_full_unstemmed | Gut Microbiotic Features Aiding the Diagnosis of Acute Ischemic Stroke |
title_short | Gut Microbiotic Features Aiding the Diagnosis of Acute Ischemic Stroke |
title_sort | gut microbiotic features aiding the diagnosis of acute ischemic stroke |
topic | Cellular and Infection Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779606/ https://www.ncbi.nlm.nih.gov/pubmed/33409158 http://dx.doi.org/10.3389/fcimb.2020.587284 |
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