How the pan-genome is changing crop genomics and improvement

Crop genomics has seen dramatic advances in recent years due to improvements in sequencing technology, assembly methods, and computational resources. These advances have led to the development of new tools to facilitate crop improvement. The study of structural variation within species and the chara...

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Autores principales: Della Coletta, Rafael, Qiu, Yinjie, Ou, Shujun, Hufford, Matthew B., Hirsch, Candice N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Review
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7780660/
https://www.ncbi.nlm.nih.gov/pubmed/33397434
http://dx.doi.org/10.1186/s13059-020-02224-8
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author Della Coletta, Rafael
Qiu, Yinjie
Ou, Shujun
Hufford, Matthew B.
Hirsch, Candice N.
author_facet Della Coletta, Rafael
Qiu, Yinjie
Ou, Shujun
Hufford, Matthew B.
Hirsch, Candice N.
author_sort Della Coletta, Rafael
collection PubMed
description Crop genomics has seen dramatic advances in recent years due to improvements in sequencing technology, assembly methods, and computational resources. These advances have led to the development of new tools to facilitate crop improvement. The study of structural variation within species and the characterization of the pan-genome has revealed extensive genome content variation among individuals within a species that is paradigm shifting to crop genomics and improvement. Here, we review advances in crop genomics and how utilization of these tools is shifting in light of pan-genomes that are becoming available for many crop species. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13059-020-02224-8.
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spelling pubmed-77806602021-01-05 How the pan-genome is changing crop genomics and improvement Della Coletta, Rafael Qiu, Yinjie Ou, Shujun Hufford, Matthew B. Hirsch, Candice N. Genome Biol Review Crop genomics has seen dramatic advances in recent years due to improvements in sequencing technology, assembly methods, and computational resources. These advances have led to the development of new tools to facilitate crop improvement. The study of structural variation within species and the characterization of the pan-genome has revealed extensive genome content variation among individuals within a species that is paradigm shifting to crop genomics and improvement. Here, we review advances in crop genomics and how utilization of these tools is shifting in light of pan-genomes that are becoming available for many crop species. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13059-020-02224-8. BioMed Central 2021-01-04 /pmc/articles/PMC7780660/ /pubmed/33397434 http://dx.doi.org/10.1186/s13059-020-02224-8 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Review
Della Coletta, Rafael
Qiu, Yinjie
Ou, Shujun
Hufford, Matthew B.
Hirsch, Candice N.
How the pan-genome is changing crop genomics and improvement
title How the pan-genome is changing crop genomics and improvement
title_full How the pan-genome is changing crop genomics and improvement
title_fullStr How the pan-genome is changing crop genomics and improvement
title_full_unstemmed How the pan-genome is changing crop genomics and improvement
title_short How the pan-genome is changing crop genomics and improvement
title_sort how the pan-genome is changing crop genomics and improvement
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7780660/
https://www.ncbi.nlm.nih.gov/pubmed/33397434
http://dx.doi.org/10.1186/s13059-020-02224-8
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