Cargando…

Complete mitochondrial DNA sequence of the paper wasp Polistes riparius (Hymenoptera: Vespidae)

The paper wasp Polistes riparius is distributed in cold regions of northern East Asia to Russia. P. riparius are characterized by having longer cells than those of the closely related P. chinensis, which has a similar life history, as an adaptation to cold regions. The phylogenetic relationships of...

Descripción completa

Detalles Bibliográficos
Autores principales: Yamasaki, Kazuhisa, Sayama, Katsuhiko, Oishi, Tomoki, Nakahama, Kanae, Yoshioka, Masato, Okuyama, Hisashi, Takahashi, Jun-ichi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781888/
https://www.ncbi.nlm.nih.gov/pubmed/33458109
http://dx.doi.org/10.1080/23802359.2020.1810155
_version_ 1783631771499233280
author Yamasaki, Kazuhisa
Sayama, Katsuhiko
Oishi, Tomoki
Nakahama, Kanae
Yoshioka, Masato
Okuyama, Hisashi
Takahashi, Jun-ichi
author_facet Yamasaki, Kazuhisa
Sayama, Katsuhiko
Oishi, Tomoki
Nakahama, Kanae
Yoshioka, Masato
Okuyama, Hisashi
Takahashi, Jun-ichi
author_sort Yamasaki, Kazuhisa
collection PubMed
description The paper wasp Polistes riparius is distributed in cold regions of northern East Asia to Russia. P. riparius are characterized by having longer cells than those of the closely related P. chinensis, which has a similar life history, as an adaptation to cold regions. The phylogenetic relationships of paper wasps have recently been studied; however, the genetic diversity and population structure of P. riparius has not been determined. The present study is the first to analyze the complete mitochondrial genome using next generation sequencing of P. riparius collected from Sapporo, Hokkaido Prefecture, Japan. The genome consisted of a closed loop that was 16,383 bp-long and included 13 protein coding genes (PCGs), 22 tRNA genes, two rRNA genes, and one AT-rich control region. The average AT content was 84.54%. The heavy (H)-strand was predicted to have 12 PCGs and 14 tRNA genes, while the light (L)-strand was predicted to contain one PCGs, eight tRNA genes, and two rRNA genes. All PCGs started with ATG. Stop codons were of two types: TAA for 11 genes (ND1, ND2, ND3, ND4L, ND5, ND6, COXI, COXII, COXIII, COB, ATP6 and ATP8) and TAG for two genes (ND3 and ND4). The molecular phylogenetic relationship based on the maximum likelihood method using 13 PCGs was consistent with some previous studies in which a closely relationship between P. riparius and P. jokahamae.
format Online
Article
Text
id pubmed-7781888
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77818882021-01-14 Complete mitochondrial DNA sequence of the paper wasp Polistes riparius (Hymenoptera: Vespidae) Yamasaki, Kazuhisa Sayama, Katsuhiko Oishi, Tomoki Nakahama, Kanae Yoshioka, Masato Okuyama, Hisashi Takahashi, Jun-ichi Mitochondrial DNA B Resour Mitogenome Announcement The paper wasp Polistes riparius is distributed in cold regions of northern East Asia to Russia. P. riparius are characterized by having longer cells than those of the closely related P. chinensis, which has a similar life history, as an adaptation to cold regions. The phylogenetic relationships of paper wasps have recently been studied; however, the genetic diversity and population structure of P. riparius has not been determined. The present study is the first to analyze the complete mitochondrial genome using next generation sequencing of P. riparius collected from Sapporo, Hokkaido Prefecture, Japan. The genome consisted of a closed loop that was 16,383 bp-long and included 13 protein coding genes (PCGs), 22 tRNA genes, two rRNA genes, and one AT-rich control region. The average AT content was 84.54%. The heavy (H)-strand was predicted to have 12 PCGs and 14 tRNA genes, while the light (L)-strand was predicted to contain one PCGs, eight tRNA genes, and two rRNA genes. All PCGs started with ATG. Stop codons were of two types: TAA for 11 genes (ND1, ND2, ND3, ND4L, ND5, ND6, COXI, COXII, COXIII, COB, ATP6 and ATP8) and TAG for two genes (ND3 and ND4). The molecular phylogenetic relationship based on the maximum likelihood method using 13 PCGs was consistent with some previous studies in which a closely relationship between P. riparius and P. jokahamae. Taylor & Francis 2020-08-25 /pmc/articles/PMC7781888/ /pubmed/33458109 http://dx.doi.org/10.1080/23802359.2020.1810155 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Yamasaki, Kazuhisa
Sayama, Katsuhiko
Oishi, Tomoki
Nakahama, Kanae
Yoshioka, Masato
Okuyama, Hisashi
Takahashi, Jun-ichi
Complete mitochondrial DNA sequence of the paper wasp Polistes riparius (Hymenoptera: Vespidae)
title Complete mitochondrial DNA sequence of the paper wasp Polistes riparius (Hymenoptera: Vespidae)
title_full Complete mitochondrial DNA sequence of the paper wasp Polistes riparius (Hymenoptera: Vespidae)
title_fullStr Complete mitochondrial DNA sequence of the paper wasp Polistes riparius (Hymenoptera: Vespidae)
title_full_unstemmed Complete mitochondrial DNA sequence of the paper wasp Polistes riparius (Hymenoptera: Vespidae)
title_short Complete mitochondrial DNA sequence of the paper wasp Polistes riparius (Hymenoptera: Vespidae)
title_sort complete mitochondrial dna sequence of the paper wasp polistes riparius (hymenoptera: vespidae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781888/
https://www.ncbi.nlm.nih.gov/pubmed/33458109
http://dx.doi.org/10.1080/23802359.2020.1810155
work_keys_str_mv AT yamasakikazuhisa completemitochondrialdnasequenceofthepaperwasppolistesripariushymenopteravespidae
AT sayamakatsuhiko completemitochondrialdnasequenceofthepaperwasppolistesripariushymenopteravespidae
AT oishitomoki completemitochondrialdnasequenceofthepaperwasppolistesripariushymenopteravespidae
AT nakahamakanae completemitochondrialdnasequenceofthepaperwasppolistesripariushymenopteravespidae
AT yoshiokamasato completemitochondrialdnasequenceofthepaperwasppolistesripariushymenopteravespidae
AT okuyamahisashi completemitochondrialdnasequenceofthepaperwasppolistesripariushymenopteravespidae
AT takahashijunichi completemitochondrialdnasequenceofthepaperwasppolistesripariushymenopteravespidae