The complete chloroplast genome sequences of the Iris loczyi kanitz (Iridaceae)

Iris loczyi is a perennial rhizomatous herb distributed in Central Asia. We examined genomic architecture of the complete chloroplast genome in I. loczyi by assembling the Illumina MiSeq reads using de novo strategy. The chloroplast genome is 150,940 bp in length harboring 79 protein-coding genes, 3...

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Autores principales: Choi, Tae-Young, Oh, Seung-Hwan, Jang, Chang-Gee, Kim, Hae-Won, Kim, Aleksey, Lee, Soo-Rang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781908/
https://www.ncbi.nlm.nih.gov/pubmed/33457985
http://dx.doi.org/10.1080/23802359.2020.1790312
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author Choi, Tae-Young
Oh, Seung-Hwan
Jang, Chang-Gee
Kim, Hae-Won
Kim, Aleksey
Lee, Soo-Rang
author_facet Choi, Tae-Young
Oh, Seung-Hwan
Jang, Chang-Gee
Kim, Hae-Won
Kim, Aleksey
Lee, Soo-Rang
author_sort Choi, Tae-Young
collection PubMed
description Iris loczyi is a perennial rhizomatous herb distributed in Central Asia. We examined genomic architecture of the complete chloroplast genome in I. loczyi by assembling the Illumina MiSeq reads using de novo strategy. The chloroplast genome is 150,940 bp in length harboring 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. It exhibits typical quadripartite structure comprising LSC (80,907 bp), SSC (17,853 bp), and a pair of IRs (26,090 bp). Phylogenetic analysis of 20 chloroplast genomes from Asparagales revealed that Iridaceae is a monophyletic group and the I. loczyi is clustered together with the congener, I. sanguinea.
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spelling pubmed-77819082021-01-14 The complete chloroplast genome sequences of the Iris loczyi kanitz (Iridaceae) Choi, Tae-Young Oh, Seung-Hwan Jang, Chang-Gee Kim, Hae-Won Kim, Aleksey Lee, Soo-Rang Mitochondrial DNA B Resour Mitogenome Announcement Iris loczyi is a perennial rhizomatous herb distributed in Central Asia. We examined genomic architecture of the complete chloroplast genome in I. loczyi by assembling the Illumina MiSeq reads using de novo strategy. The chloroplast genome is 150,940 bp in length harboring 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. It exhibits typical quadripartite structure comprising LSC (80,907 bp), SSC (17,853 bp), and a pair of IRs (26,090 bp). Phylogenetic analysis of 20 chloroplast genomes from Asparagales revealed that Iridaceae is a monophyletic group and the I. loczyi is clustered together with the congener, I. sanguinea. Taylor & Francis 2020-07-20 /pmc/articles/PMC7781908/ /pubmed/33457985 http://dx.doi.org/10.1080/23802359.2020.1790312 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Choi, Tae-Young
Oh, Seung-Hwan
Jang, Chang-Gee
Kim, Hae-Won
Kim, Aleksey
Lee, Soo-Rang
The complete chloroplast genome sequences of the Iris loczyi kanitz (Iridaceae)
title The complete chloroplast genome sequences of the Iris loczyi kanitz (Iridaceae)
title_full The complete chloroplast genome sequences of the Iris loczyi kanitz (Iridaceae)
title_fullStr The complete chloroplast genome sequences of the Iris loczyi kanitz (Iridaceae)
title_full_unstemmed The complete chloroplast genome sequences of the Iris loczyi kanitz (Iridaceae)
title_short The complete chloroplast genome sequences of the Iris loczyi kanitz (Iridaceae)
title_sort complete chloroplast genome sequences of the iris loczyi kanitz (iridaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781908/
https://www.ncbi.nlm.nih.gov/pubmed/33457985
http://dx.doi.org/10.1080/23802359.2020.1790312
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