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Complete chloroplast genome of Hevea benthamiana, a SALB-resistant relative wild species of rubber tree
Hevea benthamiana is a SALB-resistant wild species of H. brasiliensis, the only source of mass production of high quality natural rubber. This study sequenced and analyzed the chloroplast genome of H. benthamiana. The chloroplast genome of H. benthamiana contains 161,124 bp and consists of 51,495 bp...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781926/ https://www.ncbi.nlm.nih.gov/pubmed/33457743 http://dx.doi.org/10.1080/23802359.2020.1763868 |
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author | Niu, Ying-Feng Hu, Yan-Shi Liu, Zi-Yan Zheng, Cheng Liu, Jin |
author_facet | Niu, Ying-Feng Hu, Yan-Shi Liu, Zi-Yan Zheng, Cheng Liu, Jin |
author_sort | Niu, Ying-Feng |
collection | PubMed |
description | Hevea benthamiana is a SALB-resistant wild species of H. brasiliensis, the only source of mass production of high quality natural rubber. This study sequenced and analyzed the chloroplast genome of H. benthamiana. The chloroplast genome of H. benthamiana contains 161,124 bp and consists of 51,495 bp of A (31.96%), 52,022 bp of T (32.29%), 28,915 bp of G (17.95%), and 28,692 bp of C (17.81%). The ring-shaped genome includes four regions: a large single-copy region (LSC, 89,110 bp), a small single copy (SSC, 18,376 bp) region, and two inverted repeat regions (IRs, 26,819 bp). A total of 134 genes were annotated, of which 86 encode proteins; four are pseudogenes; 36 are tRNA genes, and eight are rRNA genes. Phylogenetic analyses showed that H. benthamiana is very closely related to H. Brasiliensis, this result indicates that H. benthamiana is highly valuable for the breeding of SALB-resistant varieties of rubber trees. |
format | Online Article Text |
id | pubmed-7781926 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77819262021-01-14 Complete chloroplast genome of Hevea benthamiana, a SALB-resistant relative wild species of rubber tree Niu, Ying-Feng Hu, Yan-Shi Liu, Zi-Yan Zheng, Cheng Liu, Jin Mitochondrial DNA B Resour Mitogenome Announcement Hevea benthamiana is a SALB-resistant wild species of H. brasiliensis, the only source of mass production of high quality natural rubber. This study sequenced and analyzed the chloroplast genome of H. benthamiana. The chloroplast genome of H. benthamiana contains 161,124 bp and consists of 51,495 bp of A (31.96%), 52,022 bp of T (32.29%), 28,915 bp of G (17.95%), and 28,692 bp of C (17.81%). The ring-shaped genome includes four regions: a large single-copy region (LSC, 89,110 bp), a small single copy (SSC, 18,376 bp) region, and two inverted repeat regions (IRs, 26,819 bp). A total of 134 genes were annotated, of which 86 encode proteins; four are pseudogenes; 36 are tRNA genes, and eight are rRNA genes. Phylogenetic analyses showed that H. benthamiana is very closely related to H. Brasiliensis, this result indicates that H. benthamiana is highly valuable for the breeding of SALB-resistant varieties of rubber trees. Taylor & Francis 2020-05-13 /pmc/articles/PMC7781926/ /pubmed/33457743 http://dx.doi.org/10.1080/23802359.2020.1763868 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Niu, Ying-Feng Hu, Yan-Shi Liu, Zi-Yan Zheng, Cheng Liu, Jin Complete chloroplast genome of Hevea benthamiana, a SALB-resistant relative wild species of rubber tree |
title | Complete chloroplast genome of Hevea benthamiana, a SALB-resistant relative wild species of rubber tree |
title_full | Complete chloroplast genome of Hevea benthamiana, a SALB-resistant relative wild species of rubber tree |
title_fullStr | Complete chloroplast genome of Hevea benthamiana, a SALB-resistant relative wild species of rubber tree |
title_full_unstemmed | Complete chloroplast genome of Hevea benthamiana, a SALB-resistant relative wild species of rubber tree |
title_short | Complete chloroplast genome of Hevea benthamiana, a SALB-resistant relative wild species of rubber tree |
title_sort | complete chloroplast genome of hevea benthamiana, a salb-resistant relative wild species of rubber tree |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781926/ https://www.ncbi.nlm.nih.gov/pubmed/33457743 http://dx.doi.org/10.1080/23802359.2020.1763868 |
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