The complete chloroplast genome of Hippeastrum vittatum (Amaryllidaceae)

Hippeastrum vittatum (L’Hér.) Herb. is a perennial herb in the Amaryllidaceae, which has been used as a medicinal and ornamental plant. Here, we assembled and characterized the complete chloroplast (cp) genome of H. vittatum by high throughput sequencing. As a result, the length of the complete cp g...

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Autores principales: Li, Peiling, Ren, Maofei, Zhu, Qingsong, Zhang, Yan, Xu, Hanbing, Wang, Zhiyong, Liu, Songhu, Cheng, Qin, Liang, Benguo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781927/
https://www.ncbi.nlm.nih.gov/pubmed/33458226
http://dx.doi.org/10.1080/23802359.2020.1827059
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author Li, Peiling
Ren, Maofei
Zhu, Qingsong
Zhang, Yan
Xu, Hanbing
Wang, Zhiyong
Liu, Songhu
Cheng, Qin
Liang, Benguo
author_facet Li, Peiling
Ren, Maofei
Zhu, Qingsong
Zhang, Yan
Xu, Hanbing
Wang, Zhiyong
Liu, Songhu
Cheng, Qin
Liang, Benguo
author_sort Li, Peiling
collection PubMed
description Hippeastrum vittatum (L’Hér.) Herb. is a perennial herb in the Amaryllidaceae, which has been used as a medicinal and ornamental plant. Here, we assembled and characterized the complete chloroplast (cp) genome of H. vittatum by high throughput sequencing. As a result, the length of the complete cp genome is 158,082 bp with a canonical quadripartite structure, consists of a large single-copy region (LSC) of 86,165 bp, a small single-copy region (SSC) of 18,283 bp, and two inverted repeat (IR) regions of 26,817 bp, each. A total of 137 genes were identified, including 87 protein-coding genes, 42 tRNA genes, and 8 rRNA genes. The phylogenomic analysis was performed based on the complete cp genomes of 30 species, which revealed the closest relationship between H. vittatum and H. rutilum in the genus Hippeastrum.
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spelling pubmed-77819272021-01-14 The complete chloroplast genome of Hippeastrum vittatum (Amaryllidaceae) Li, Peiling Ren, Maofei Zhu, Qingsong Zhang, Yan Xu, Hanbing Wang, Zhiyong Liu, Songhu Cheng, Qin Liang, Benguo Mitochondrial DNA B Resour Mitogenome Announcement Hippeastrum vittatum (L’Hér.) Herb. is a perennial herb in the Amaryllidaceae, which has been used as a medicinal and ornamental plant. Here, we assembled and characterized the complete chloroplast (cp) genome of H. vittatum by high throughput sequencing. As a result, the length of the complete cp genome is 158,082 bp with a canonical quadripartite structure, consists of a large single-copy region (LSC) of 86,165 bp, a small single-copy region (SSC) of 18,283 bp, and two inverted repeat (IR) regions of 26,817 bp, each. A total of 137 genes were identified, including 87 protein-coding genes, 42 tRNA genes, and 8 rRNA genes. The phylogenomic analysis was performed based on the complete cp genomes of 30 species, which revealed the closest relationship between H. vittatum and H. rutilum in the genus Hippeastrum. Taylor & Francis 2020-10-09 /pmc/articles/PMC7781927/ /pubmed/33458226 http://dx.doi.org/10.1080/23802359.2020.1827059 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Li, Peiling
Ren, Maofei
Zhu, Qingsong
Zhang, Yan
Xu, Hanbing
Wang, Zhiyong
Liu, Songhu
Cheng, Qin
Liang, Benguo
The complete chloroplast genome of Hippeastrum vittatum (Amaryllidaceae)
title The complete chloroplast genome of Hippeastrum vittatum (Amaryllidaceae)
title_full The complete chloroplast genome of Hippeastrum vittatum (Amaryllidaceae)
title_fullStr The complete chloroplast genome of Hippeastrum vittatum (Amaryllidaceae)
title_full_unstemmed The complete chloroplast genome of Hippeastrum vittatum (Amaryllidaceae)
title_short The complete chloroplast genome of Hippeastrum vittatum (Amaryllidaceae)
title_sort complete chloroplast genome of hippeastrum vittatum (amaryllidaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781927/
https://www.ncbi.nlm.nih.gov/pubmed/33458226
http://dx.doi.org/10.1080/23802359.2020.1827059
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