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The complete chloroplast genome sequence of Knema linifolia (Myristicaceae)
Knema linifolia is a member of Myristicaceae. The K. linifolia chloroplast genome is found to be 155,754 bp in length and has a base composition of A (30.02%), G (19.30%), C (19.89%), and T (30.79%). The genome contained two short inverted repeat (IRa and IRb) regions (48,080 bp) which were separate...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781947/ https://www.ncbi.nlm.nih.gov/pubmed/33457994 http://dx.doi.org/10.1080/23802359.2020.1791747 |
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author | Li, Xiao-Qin Zhang, Feng-Liang Mao, Chang-Li Yang, Tian Zhao, Qi Wu, Yu |
author_facet | Li, Xiao-Qin Zhang, Feng-Liang Mao, Chang-Li Yang, Tian Zhao, Qi Wu, Yu |
author_sort | Li, Xiao-Qin |
collection | PubMed |
description | Knema linifolia is a member of Myristicaceae. The K. linifolia chloroplast genome is found to be 155,754 bp in length and has a base composition of A (30.02%), G (19.30%), C (19.89%), and T (30.79%). The genome contained two short inverted repeat (IRa and IRb) regions (48,080 bp) which were separated by a large single copy (LSC) region (86,991 bp) and a small single copy (SSC) region (20,683 bp). The chloroplast genome has 89 protein-coding genes, 31 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. Further, complete chloroplast sequence of K. linifolia was aligned together with 2 species of Knema and 5 basal angiosperms species which have reported the complete chloroplast sequence. This complete chloroplast genome will provide valuable information for the development of DNA markers for future species resource development and phylogenetic analysis of K. linifolia. |
format | Online Article Text |
id | pubmed-7781947 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77819472021-01-14 The complete chloroplast genome sequence of Knema linifolia (Myristicaceae) Li, Xiao-Qin Zhang, Feng-Liang Mao, Chang-Li Yang, Tian Zhao, Qi Wu, Yu Mitochondrial DNA B Resour Mitogenome Announcement Knema linifolia is a member of Myristicaceae. The K. linifolia chloroplast genome is found to be 155,754 bp in length and has a base composition of A (30.02%), G (19.30%), C (19.89%), and T (30.79%). The genome contained two short inverted repeat (IRa and IRb) regions (48,080 bp) which were separated by a large single copy (LSC) region (86,991 bp) and a small single copy (SSC) region (20,683 bp). The chloroplast genome has 89 protein-coding genes, 31 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. Further, complete chloroplast sequence of K. linifolia was aligned together with 2 species of Knema and 5 basal angiosperms species which have reported the complete chloroplast sequence. This complete chloroplast genome will provide valuable information for the development of DNA markers for future species resource development and phylogenetic analysis of K. linifolia. Taylor & Francis 2020-07-22 /pmc/articles/PMC7781947/ /pubmed/33457994 http://dx.doi.org/10.1080/23802359.2020.1791747 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Li, Xiao-Qin Zhang, Feng-Liang Mao, Chang-Li Yang, Tian Zhao, Qi Wu, Yu The complete chloroplast genome sequence of Knema linifolia (Myristicaceae) |
title | The complete chloroplast genome sequence of Knema linifolia (Myristicaceae) |
title_full | The complete chloroplast genome sequence of Knema linifolia (Myristicaceae) |
title_fullStr | The complete chloroplast genome sequence of Knema linifolia (Myristicaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Knema linifolia (Myristicaceae) |
title_short | The complete chloroplast genome sequence of Knema linifolia (Myristicaceae) |
title_sort | complete chloroplast genome sequence of knema linifolia (myristicaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781947/ https://www.ncbi.nlm.nih.gov/pubmed/33457994 http://dx.doi.org/10.1080/23802359.2020.1791747 |
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