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Complete chloroplast genome sequence of Acer sutchuenense subsp. tienchuanenge (Sapindaceae)
Acer sutchuenense subsp. tienchuanenge (Sapindaceae: Acer) is an endangered deciduous arbor species and endemic to China. Being obtained by using genome Illumina pair-end sequencing data, the complete chloroplast genome of A. sutchuenense subsp. tienchuanenge had a typical quadripartite structure, w...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781949/ https://www.ncbi.nlm.nih.gov/pubmed/33457988 http://dx.doi.org/10.1080/23802359.2020.1791002 |
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author | Zhang, Wei Xia, Xinhe Chen, Difei Li, Jiayong He, Wei Ma, Wenbao Wu, Bixian Zheng, Yongqi Zhang, Chuanhong |
author_facet | Zhang, Wei Xia, Xinhe Chen, Difei Li, Jiayong He, Wei Ma, Wenbao Wu, Bixian Zheng, Yongqi Zhang, Chuanhong |
author_sort | Zhang, Wei |
collection | PubMed |
description | Acer sutchuenense subsp. tienchuanenge (Sapindaceae: Acer) is an endangered deciduous arbor species and endemic to China. Being obtained by using genome Illumina pair-end sequencing data, the complete chloroplast genome of A. sutchuenense subsp. tienchuanenge had a typical quadripartite structure, with 156,063 bp long, including a large single-copy (LSC) region of 85,772 bp, a small single-copy (SSC) region of 18,117 bp, and a pair of inverted repeats (IRs) (each 26,087 bp in length). A total of 136 genes were annotated, of which 113 are unique genes, including 30 tRNAs, 4 rRNAs, and 79 protein-coding genes. The overall GC content was 37.9%. The phylogenetic analysis suggested that A. sutchuenense subsp. tienchuanenge was the most closely related to A. griseum and A. triflorum. The complete chloroplast genome of A. sutchuenense subsp. tienchuanenge is valuable for assessment and conservation of genetic resources and further for phylogenetic study of Acer L. |
format | Online Article Text |
id | pubmed-7781949 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77819492021-01-14 Complete chloroplast genome sequence of Acer sutchuenense subsp. tienchuanenge (Sapindaceae) Zhang, Wei Xia, Xinhe Chen, Difei Li, Jiayong He, Wei Ma, Wenbao Wu, Bixian Zheng, Yongqi Zhang, Chuanhong Mitochondrial DNA B Resour Mitogenome Announcement Acer sutchuenense subsp. tienchuanenge (Sapindaceae: Acer) is an endangered deciduous arbor species and endemic to China. Being obtained by using genome Illumina pair-end sequencing data, the complete chloroplast genome of A. sutchuenense subsp. tienchuanenge had a typical quadripartite structure, with 156,063 bp long, including a large single-copy (LSC) region of 85,772 bp, a small single-copy (SSC) region of 18,117 bp, and a pair of inverted repeats (IRs) (each 26,087 bp in length). A total of 136 genes were annotated, of which 113 are unique genes, including 30 tRNAs, 4 rRNAs, and 79 protein-coding genes. The overall GC content was 37.9%. The phylogenetic analysis suggested that A. sutchuenense subsp. tienchuanenge was the most closely related to A. griseum and A. triflorum. The complete chloroplast genome of A. sutchuenense subsp. tienchuanenge is valuable for assessment and conservation of genetic resources and further for phylogenetic study of Acer L. Taylor & Francis 2020-07-20 /pmc/articles/PMC7781949/ /pubmed/33457988 http://dx.doi.org/10.1080/23802359.2020.1791002 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zhang, Wei Xia, Xinhe Chen, Difei Li, Jiayong He, Wei Ma, Wenbao Wu, Bixian Zheng, Yongqi Zhang, Chuanhong Complete chloroplast genome sequence of Acer sutchuenense subsp. tienchuanenge (Sapindaceae) |
title | Complete chloroplast genome sequence of Acer sutchuenense subsp. tienchuanenge (Sapindaceae) |
title_full | Complete chloroplast genome sequence of Acer sutchuenense subsp. tienchuanenge (Sapindaceae) |
title_fullStr | Complete chloroplast genome sequence of Acer sutchuenense subsp. tienchuanenge (Sapindaceae) |
title_full_unstemmed | Complete chloroplast genome sequence of Acer sutchuenense subsp. tienchuanenge (Sapindaceae) |
title_short | Complete chloroplast genome sequence of Acer sutchuenense subsp. tienchuanenge (Sapindaceae) |
title_sort | complete chloroplast genome sequence of acer sutchuenense subsp. tienchuanenge (sapindaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781949/ https://www.ncbi.nlm.nih.gov/pubmed/33457988 http://dx.doi.org/10.1080/23802359.2020.1791002 |
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