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The complete chloroplast genome of a medicinal plant Anemone flaccida (Ranunculaceae)
Anemone flaccida has long-term been used in Chinese traditional medicine with the effects of anticancer, anti-inflammatory, antimicrobial properties, and immune regulation. However, the genomic information of this species is limited, which hinders its further medicinal application. In the present st...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781952/ https://www.ncbi.nlm.nih.gov/pubmed/33457744 http://dx.doi.org/10.1080/23802359.2020.1763869 |
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author | Tang, Yuwen Liu, Yifei Liu, Man Hu, Zhigang Huang, Bisheng |
author_facet | Tang, Yuwen Liu, Yifei Liu, Man Hu, Zhigang Huang, Bisheng |
author_sort | Tang, Yuwen |
collection | PubMed |
description | Anemone flaccida has long-term been used in Chinese traditional medicine with the effects of anticancer, anti-inflammatory, antimicrobial properties, and immune regulation. However, the genomic information of this species is limited, which hinders its further medicinal application. In the present study, the complete chloroplast genome of A. flaccida was sequenced and assembled. The genome size was 157,614 bp in length, consisting of a pair of inverted repeat regions (IR, 31,184 bp), a large single copy (LSC, 79,055 bp), and a small single copy (SSC, 16,191 bp). A total of 138 genes were annotated, including 90 protein-coding genes, 40 tRNA genes, and eight rRNA genes. The GC content of the genome was 37.74%. A phylogenetic analysis on the basis of the whole chloroplast genome sequences further suggested a close relationship between A. flaccida, A. narcissiflora, and A. trullifolia. Collectively, the A. flaccida chloroplast genome provided new genomic resources which will improve its research and application in the future. |
format | Online Article Text |
id | pubmed-7781952 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77819522021-01-14 The complete chloroplast genome of a medicinal plant Anemone flaccida (Ranunculaceae) Tang, Yuwen Liu, Yifei Liu, Man Hu, Zhigang Huang, Bisheng Mitochondrial DNA B Resour Mitogenome Announcement Anemone flaccida has long-term been used in Chinese traditional medicine with the effects of anticancer, anti-inflammatory, antimicrobial properties, and immune regulation. However, the genomic information of this species is limited, which hinders its further medicinal application. In the present study, the complete chloroplast genome of A. flaccida was sequenced and assembled. The genome size was 157,614 bp in length, consisting of a pair of inverted repeat regions (IR, 31,184 bp), a large single copy (LSC, 79,055 bp), and a small single copy (SSC, 16,191 bp). A total of 138 genes were annotated, including 90 protein-coding genes, 40 tRNA genes, and eight rRNA genes. The GC content of the genome was 37.74%. A phylogenetic analysis on the basis of the whole chloroplast genome sequences further suggested a close relationship between A. flaccida, A. narcissiflora, and A. trullifolia. Collectively, the A. flaccida chloroplast genome provided new genomic resources which will improve its research and application in the future. Taylor & Francis 2020-05-13 /pmc/articles/PMC7781952/ /pubmed/33457744 http://dx.doi.org/10.1080/23802359.2020.1763869 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Tang, Yuwen Liu, Yifei Liu, Man Hu, Zhigang Huang, Bisheng The complete chloroplast genome of a medicinal plant Anemone flaccida (Ranunculaceae) |
title | The complete chloroplast genome of a medicinal plant Anemone flaccida (Ranunculaceae) |
title_full | The complete chloroplast genome of a medicinal plant Anemone flaccida (Ranunculaceae) |
title_fullStr | The complete chloroplast genome of a medicinal plant Anemone flaccida (Ranunculaceae) |
title_full_unstemmed | The complete chloroplast genome of a medicinal plant Anemone flaccida (Ranunculaceae) |
title_short | The complete chloroplast genome of a medicinal plant Anemone flaccida (Ranunculaceae) |
title_sort | complete chloroplast genome of a medicinal plant anemone flaccida (ranunculaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781952/ https://www.ncbi.nlm.nih.gov/pubmed/33457744 http://dx.doi.org/10.1080/23802359.2020.1763869 |
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