Cargando…

The complete chloroplast genome of a medicinal plant Anemone flaccida (Ranunculaceae)

Anemone flaccida has long-term been used in Chinese traditional medicine with the effects of anticancer, anti-inflammatory, antimicrobial properties, and immune regulation. However, the genomic information of this species is limited, which hinders its further medicinal application. In the present st...

Descripción completa

Detalles Bibliográficos
Autores principales: Tang, Yuwen, Liu, Yifei, Liu, Man, Hu, Zhigang, Huang, Bisheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781952/
https://www.ncbi.nlm.nih.gov/pubmed/33457744
http://dx.doi.org/10.1080/23802359.2020.1763869
_version_ 1783631786784325632
author Tang, Yuwen
Liu, Yifei
Liu, Man
Hu, Zhigang
Huang, Bisheng
author_facet Tang, Yuwen
Liu, Yifei
Liu, Man
Hu, Zhigang
Huang, Bisheng
author_sort Tang, Yuwen
collection PubMed
description Anemone flaccida has long-term been used in Chinese traditional medicine with the effects of anticancer, anti-inflammatory, antimicrobial properties, and immune regulation. However, the genomic information of this species is limited, which hinders its further medicinal application. In the present study, the complete chloroplast genome of A. flaccida was sequenced and assembled. The genome size was 157,614 bp in length, consisting of a pair of inverted repeat regions (IR, 31,184 bp), a large single copy (LSC, 79,055 bp), and a small single copy (SSC, 16,191 bp). A total of 138 genes were annotated, including 90 protein-coding genes, 40 tRNA genes, and eight rRNA genes. The GC content of the genome was 37.74%. A phylogenetic analysis on the basis of the whole chloroplast genome sequences further suggested a close relationship between A. flaccida, A. narcissiflora, and A. trullifolia. Collectively, the A. flaccida chloroplast genome provided new genomic resources which will improve its research and application in the future.
format Online
Article
Text
id pubmed-7781952
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77819522021-01-14 The complete chloroplast genome of a medicinal plant Anemone flaccida (Ranunculaceae) Tang, Yuwen Liu, Yifei Liu, Man Hu, Zhigang Huang, Bisheng Mitochondrial DNA B Resour Mitogenome Announcement Anemone flaccida has long-term been used in Chinese traditional medicine with the effects of anticancer, anti-inflammatory, antimicrobial properties, and immune regulation. However, the genomic information of this species is limited, which hinders its further medicinal application. In the present study, the complete chloroplast genome of A. flaccida was sequenced and assembled. The genome size was 157,614 bp in length, consisting of a pair of inverted repeat regions (IR, 31,184 bp), a large single copy (LSC, 79,055 bp), and a small single copy (SSC, 16,191 bp). A total of 138 genes were annotated, including 90 protein-coding genes, 40 tRNA genes, and eight rRNA genes. The GC content of the genome was 37.74%. A phylogenetic analysis on the basis of the whole chloroplast genome sequences further suggested a close relationship between A. flaccida, A. narcissiflora, and A. trullifolia. Collectively, the A. flaccida chloroplast genome provided new genomic resources which will improve its research and application in the future. Taylor & Francis 2020-05-13 /pmc/articles/PMC7781952/ /pubmed/33457744 http://dx.doi.org/10.1080/23802359.2020.1763869 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Tang, Yuwen
Liu, Yifei
Liu, Man
Hu, Zhigang
Huang, Bisheng
The complete chloroplast genome of a medicinal plant Anemone flaccida (Ranunculaceae)
title The complete chloroplast genome of a medicinal plant Anemone flaccida (Ranunculaceae)
title_full The complete chloroplast genome of a medicinal plant Anemone flaccida (Ranunculaceae)
title_fullStr The complete chloroplast genome of a medicinal plant Anemone flaccida (Ranunculaceae)
title_full_unstemmed The complete chloroplast genome of a medicinal plant Anemone flaccida (Ranunculaceae)
title_short The complete chloroplast genome of a medicinal plant Anemone flaccida (Ranunculaceae)
title_sort complete chloroplast genome of a medicinal plant anemone flaccida (ranunculaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781952/
https://www.ncbi.nlm.nih.gov/pubmed/33457744
http://dx.doi.org/10.1080/23802359.2020.1763869
work_keys_str_mv AT tangyuwen thecompletechloroplastgenomeofamedicinalplantanemoneflaccidaranunculaceae
AT liuyifei thecompletechloroplastgenomeofamedicinalplantanemoneflaccidaranunculaceae
AT liuman thecompletechloroplastgenomeofamedicinalplantanemoneflaccidaranunculaceae
AT huzhigang thecompletechloroplastgenomeofamedicinalplantanemoneflaccidaranunculaceae
AT huangbisheng thecompletechloroplastgenomeofamedicinalplantanemoneflaccidaranunculaceae
AT tangyuwen completechloroplastgenomeofamedicinalplantanemoneflaccidaranunculaceae
AT liuyifei completechloroplastgenomeofamedicinalplantanemoneflaccidaranunculaceae
AT liuman completechloroplastgenomeofamedicinalplantanemoneflaccidaranunculaceae
AT huzhigang completechloroplastgenomeofamedicinalplantanemoneflaccidaranunculaceae
AT huangbisheng completechloroplastgenomeofamedicinalplantanemoneflaccidaranunculaceae