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The complete chloroplast genome sequence of Populus davidiana, and a comparative analysis with other Populus species

Populus davidiana plays an important ecological role in boreal and temperate forests, serving as wildlife habitats and watersheds. The complete chloroplast genome sequence of P. davidiana was characterized from Illumina pair-end sequencing. The chloroplast genome of P. davidiana was 155,325 bp in le...

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Autores principales: Sun, Chong, Gong, Xia, Liu, Xia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781954/
https://www.ncbi.nlm.nih.gov/pubmed/33457780
http://dx.doi.org/10.1080/23802359.2020.1773344
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author Sun, Chong
Gong, Xia
Liu, Xia
author_facet Sun, Chong
Gong, Xia
Liu, Xia
author_sort Sun, Chong
collection PubMed
description Populus davidiana plays an important ecological role in boreal and temperate forests, serving as wildlife habitats and watersheds. The complete chloroplast genome sequence of P. davidiana was characterized from Illumina pair-end sequencing. The chloroplast genome of P. davidiana was 155,325 bp in length, containing a large single-copy region (LSC) of 84,679 bp, a small single-copy region (SSC) of 16,862 bp, and two inverted repeat (IR) regions of 26,892 bp. The overall GC content is 36.80%, while the corresponding values of the LSC, SSC, and IR regions are 34.5%, 30.5%, and 42.5%, respectively. The genome contains 131 complete genes, including 86 protein-coding genes (62 protein-coding gene species), 37 tRNA genes (29 tRNA species), and 8 rRNA genes (4 rRNA species). The neighbour-joining phylogenetic analysis showed that P. davidiana and P. hopeiensis clustered together as sisters to other Populus species.
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spelling pubmed-77819542021-01-14 The complete chloroplast genome sequence of Populus davidiana, and a comparative analysis with other Populus species Sun, Chong Gong, Xia Liu, Xia Mitochondrial DNA B Resour Mitogenome Announcement Populus davidiana plays an important ecological role in boreal and temperate forests, serving as wildlife habitats and watersheds. The complete chloroplast genome sequence of P. davidiana was characterized from Illumina pair-end sequencing. The chloroplast genome of P. davidiana was 155,325 bp in length, containing a large single-copy region (LSC) of 84,679 bp, a small single-copy region (SSC) of 16,862 bp, and two inverted repeat (IR) regions of 26,892 bp. The overall GC content is 36.80%, while the corresponding values of the LSC, SSC, and IR regions are 34.5%, 30.5%, and 42.5%, respectively. The genome contains 131 complete genes, including 86 protein-coding genes (62 protein-coding gene species), 37 tRNA genes (29 tRNA species), and 8 rRNA genes (4 rRNA species). The neighbour-joining phylogenetic analysis showed that P. davidiana and P. hopeiensis clustered together as sisters to other Populus species. Taylor & Francis 2020-06-04 /pmc/articles/PMC7781954/ /pubmed/33457780 http://dx.doi.org/10.1080/23802359.2020.1773344 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Sun, Chong
Gong, Xia
Liu, Xia
The complete chloroplast genome sequence of Populus davidiana, and a comparative analysis with other Populus species
title The complete chloroplast genome sequence of Populus davidiana, and a comparative analysis with other Populus species
title_full The complete chloroplast genome sequence of Populus davidiana, and a comparative analysis with other Populus species
title_fullStr The complete chloroplast genome sequence of Populus davidiana, and a comparative analysis with other Populus species
title_full_unstemmed The complete chloroplast genome sequence of Populus davidiana, and a comparative analysis with other Populus species
title_short The complete chloroplast genome sequence of Populus davidiana, and a comparative analysis with other Populus species
title_sort complete chloroplast genome sequence of populus davidiana, and a comparative analysis with other populus species
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781954/
https://www.ncbi.nlm.nih.gov/pubmed/33457780
http://dx.doi.org/10.1080/23802359.2020.1773344
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