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The complete chloroplast genome sequence of Populus simonii, a medicinal plant for anti-lung cancer activity
Lung cancer is one of the most common malignant tumors. It is clinically divided into two types: small cell lung cancer and non-small cell lung cancer. Populus simonii distributed in East Asia region including China used as traditional medicine, which is an important medicinal plant for anti-lung ca...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781955/ https://www.ncbi.nlm.nih.gov/pubmed/33457906 http://dx.doi.org/10.1080/23802359.2020.1788461 |
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author | Zhuo, Yi Lin, Jian-Bo Yin, Yin-He Lai, Fan-Cai |
author_facet | Zhuo, Yi Lin, Jian-Bo Yin, Yin-He Lai, Fan-Cai |
author_sort | Zhuo, Yi |
collection | PubMed |
description | Lung cancer is one of the most common malignant tumors. It is clinically divided into two types: small cell lung cancer and non-small cell lung cancer. Populus simonii distributed in East Asia region including China used as traditional medicine, which is an important medicinal plant for anti-lung cancer activity. The complete chloroplast genome sequence of P. simonii was characterized from Illumina pair-end sequencing. The chloroplast genome of P. simonii was 156,559 bp in length, containing a large single-copy region (LSC) of 84,825 bp, a small single-copy region (SSC) of 47,561 bp, and two inverted repeat (IR) regions of 16,494 bp. The overall GC content is 36.70%, while the corresponding values of the LSC, SSC, and IR regions are 34.5%, 30.0%, and 42.0%, respectively. The genome contains 131 complete genes, including 86 protein-coding genes (68 protein-coding gene species), 37 tRNA genes (29 tRNA species), and 8 rRNA genes (4 rRNA species). The neighbour-joining phylogenetic analysis showed that P. simonii and P. qamdoensis clustered together as sisters to other Populus species. |
format | Online Article Text |
id | pubmed-7781955 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77819552021-01-14 The complete chloroplast genome sequence of Populus simonii, a medicinal plant for anti-lung cancer activity Zhuo, Yi Lin, Jian-Bo Yin, Yin-He Lai, Fan-Cai Mitochondrial DNA B Resour Mitogenome Announcement Lung cancer is one of the most common malignant tumors. It is clinically divided into two types: small cell lung cancer and non-small cell lung cancer. Populus simonii distributed in East Asia region including China used as traditional medicine, which is an important medicinal plant for anti-lung cancer activity. The complete chloroplast genome sequence of P. simonii was characterized from Illumina pair-end sequencing. The chloroplast genome of P. simonii was 156,559 bp in length, containing a large single-copy region (LSC) of 84,825 bp, a small single-copy region (SSC) of 47,561 bp, and two inverted repeat (IR) regions of 16,494 bp. The overall GC content is 36.70%, while the corresponding values of the LSC, SSC, and IR regions are 34.5%, 30.0%, and 42.0%, respectively. The genome contains 131 complete genes, including 86 protein-coding genes (68 protein-coding gene species), 37 tRNA genes (29 tRNA species), and 8 rRNA genes (4 rRNA species). The neighbour-joining phylogenetic analysis showed that P. simonii and P. qamdoensis clustered together as sisters to other Populus species. Taylor & Francis 2020-07-07 /pmc/articles/PMC7781955/ /pubmed/33457906 http://dx.doi.org/10.1080/23802359.2020.1788461 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zhuo, Yi Lin, Jian-Bo Yin, Yin-He Lai, Fan-Cai The complete chloroplast genome sequence of Populus simonii, a medicinal plant for anti-lung cancer activity |
title | The complete chloroplast genome sequence of Populus simonii, a medicinal plant for anti-lung cancer activity |
title_full | The complete chloroplast genome sequence of Populus simonii, a medicinal plant for anti-lung cancer activity |
title_fullStr | The complete chloroplast genome sequence of Populus simonii, a medicinal plant for anti-lung cancer activity |
title_full_unstemmed | The complete chloroplast genome sequence of Populus simonii, a medicinal plant for anti-lung cancer activity |
title_short | The complete chloroplast genome sequence of Populus simonii, a medicinal plant for anti-lung cancer activity |
title_sort | complete chloroplast genome sequence of populus simonii, a medicinal plant for anti-lung cancer activity |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781955/ https://www.ncbi.nlm.nih.gov/pubmed/33457906 http://dx.doi.org/10.1080/23802359.2020.1788461 |
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