Cargando…
The complete chloroplast genome sequence of Lirianthe hodgsonii, a tree species of Magnoliaceae as least concern
Lirianthe hodgsonii is a tree species of Magnoliaceae as least concern. In the present paper, the complete chloroplast genome (cpDNA) and basic annotated information of L. hodgsonii were reported and its phylogenetic relationship with other species in Magnoliaceae was analyzed. The size of its compl...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781970/ https://www.ncbi.nlm.nih.gov/pubmed/33458060 http://dx.doi.org/10.1080/23802359.2020.1798296 |
_version_ | 1783631791123333120 |
---|---|
author | Chen, Shao-Yu Wu, Tao Ma, Hui-Fen Fu, Yu-Pin Zhu, Yun-Feng Hao, Jia-Bo Jiang, Hong Sima, Yong-Kang |
author_facet | Chen, Shao-Yu Wu, Tao Ma, Hui-Fen Fu, Yu-Pin Zhu, Yun-Feng Hao, Jia-Bo Jiang, Hong Sima, Yong-Kang |
author_sort | Chen, Shao-Yu |
collection | PubMed |
description | Lirianthe hodgsonii is a tree species of Magnoliaceae as least concern. In the present paper, the complete chloroplast genome (cpDNA) and basic annotated information of L. hodgsonii were reported and its phylogenetic relationship with other species in Magnoliaceae was analyzed. The size of its complete cpDNA is 159,693 bp, with a typical quadripartite structure comprising a pair of inverted repeat (IR) regions of 26,546 bp, a large single-copy (LSC) region of 87,848 bp and a small single-copy (SSC) region of 18,753 bp. The genome contains 131 unique genes, including 86 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenetic analysis showed that L. hodgsonii is affinal to Lirianthe bidoupensis and they form a monophyletic group with other seven Lirianthe species. This Lirianthe clade is sister to the Dugandiodendron and Talauma clade with high support. All genera mentioned in this analysis are monophyletic under the system of Magnoliaceae by Sima and Lu. |
format | Online Article Text |
id | pubmed-7781970 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77819702021-01-14 The complete chloroplast genome sequence of Lirianthe hodgsonii, a tree species of Magnoliaceae as least concern Chen, Shao-Yu Wu, Tao Ma, Hui-Fen Fu, Yu-Pin Zhu, Yun-Feng Hao, Jia-Bo Jiang, Hong Sima, Yong-Kang Mitochondrial DNA B Resour Mitogenome Announcement Lirianthe hodgsonii is a tree species of Magnoliaceae as least concern. In the present paper, the complete chloroplast genome (cpDNA) and basic annotated information of L. hodgsonii were reported and its phylogenetic relationship with other species in Magnoliaceae was analyzed. The size of its complete cpDNA is 159,693 bp, with a typical quadripartite structure comprising a pair of inverted repeat (IR) regions of 26,546 bp, a large single-copy (LSC) region of 87,848 bp and a small single-copy (SSC) region of 18,753 bp. The genome contains 131 unique genes, including 86 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenetic analysis showed that L. hodgsonii is affinal to Lirianthe bidoupensis and they form a monophyletic group with other seven Lirianthe species. This Lirianthe clade is sister to the Dugandiodendron and Talauma clade with high support. All genera mentioned in this analysis are monophyletic under the system of Magnoliaceae by Sima and Lu. Taylor & Francis 2020-07-29 /pmc/articles/PMC7781970/ /pubmed/33458060 http://dx.doi.org/10.1080/23802359.2020.1798296 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Chen, Shao-Yu Wu, Tao Ma, Hui-Fen Fu, Yu-Pin Zhu, Yun-Feng Hao, Jia-Bo Jiang, Hong Sima, Yong-Kang The complete chloroplast genome sequence of Lirianthe hodgsonii, a tree species of Magnoliaceae as least concern |
title | The complete chloroplast genome sequence of Lirianthe hodgsonii, a tree species of Magnoliaceae as least concern |
title_full | The complete chloroplast genome sequence of Lirianthe hodgsonii, a tree species of Magnoliaceae as least concern |
title_fullStr | The complete chloroplast genome sequence of Lirianthe hodgsonii, a tree species of Magnoliaceae as least concern |
title_full_unstemmed | The complete chloroplast genome sequence of Lirianthe hodgsonii, a tree species of Magnoliaceae as least concern |
title_short | The complete chloroplast genome sequence of Lirianthe hodgsonii, a tree species of Magnoliaceae as least concern |
title_sort | complete chloroplast genome sequence of lirianthe hodgsonii, a tree species of magnoliaceae as least concern |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781970/ https://www.ncbi.nlm.nih.gov/pubmed/33458060 http://dx.doi.org/10.1080/23802359.2020.1798296 |
work_keys_str_mv | AT chenshaoyu thecompletechloroplastgenomesequenceoflirianthehodgsoniiatreespeciesofmagnoliaceaeasleastconcern AT wutao thecompletechloroplastgenomesequenceoflirianthehodgsoniiatreespeciesofmagnoliaceaeasleastconcern AT mahuifen thecompletechloroplastgenomesequenceoflirianthehodgsoniiatreespeciesofmagnoliaceaeasleastconcern AT fuyupin thecompletechloroplastgenomesequenceoflirianthehodgsoniiatreespeciesofmagnoliaceaeasleastconcern AT zhuyunfeng thecompletechloroplastgenomesequenceoflirianthehodgsoniiatreespeciesofmagnoliaceaeasleastconcern AT haojiabo thecompletechloroplastgenomesequenceoflirianthehodgsoniiatreespeciesofmagnoliaceaeasleastconcern AT jianghong thecompletechloroplastgenomesequenceoflirianthehodgsoniiatreespeciesofmagnoliaceaeasleastconcern AT simayongkang thecompletechloroplastgenomesequenceoflirianthehodgsoniiatreespeciesofmagnoliaceaeasleastconcern AT chenshaoyu completechloroplastgenomesequenceoflirianthehodgsoniiatreespeciesofmagnoliaceaeasleastconcern AT wutao completechloroplastgenomesequenceoflirianthehodgsoniiatreespeciesofmagnoliaceaeasleastconcern AT mahuifen completechloroplastgenomesequenceoflirianthehodgsoniiatreespeciesofmagnoliaceaeasleastconcern AT fuyupin completechloroplastgenomesequenceoflirianthehodgsoniiatreespeciesofmagnoliaceaeasleastconcern AT zhuyunfeng completechloroplastgenomesequenceoflirianthehodgsoniiatreespeciesofmagnoliaceaeasleastconcern AT haojiabo completechloroplastgenomesequenceoflirianthehodgsoniiatreespeciesofmagnoliaceaeasleastconcern AT jianghong completechloroplastgenomesequenceoflirianthehodgsoniiatreespeciesofmagnoliaceaeasleastconcern AT simayongkang completechloroplastgenomesequenceoflirianthehodgsoniiatreespeciesofmagnoliaceaeasleastconcern |