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The complete mitochondrial genome of Luffa acutangula
Based on PacBio de novo assembly, we report the first complete mitochondrial genome of Luffa acutangula (460,333 bp) containing nine large chloroplast-derived sequences (1.9–17.3 kb) across the mitogenome. The base composition of the mitogenome in descending order is A: 28.02%, C: 22.04%, G: 21.83%...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781975/ https://www.ncbi.nlm.nih.gov/pubmed/33458114 http://dx.doi.org/10.1080/23802359.2020.1810165 |
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author | Ruang-areerate, Panthita Shearman, Jeremy Kongkachana, Wasitthee Jomchai, Nukoon Yoocha, Thippawan U-thoomporn, Sonicha Narong, Nattapol Sheedy, John Robert Mekiyanon, Supat Pootakham, Wirulda Tangphatsornruang, Sithichoke |
author_facet | Ruang-areerate, Panthita Shearman, Jeremy Kongkachana, Wasitthee Jomchai, Nukoon Yoocha, Thippawan U-thoomporn, Sonicha Narong, Nattapol Sheedy, John Robert Mekiyanon, Supat Pootakham, Wirulda Tangphatsornruang, Sithichoke |
author_sort | Ruang-areerate, Panthita |
collection | PubMed |
description | Based on PacBio de novo assembly, we report the first complete mitochondrial genome of Luffa acutangula (460,333 bp) containing nine large chloroplast-derived sequences (1.9–17.3 kb) across the mitogenome. The base composition of the mitogenome in descending order is A: 28.02%, C: 22.04%, G: 21.83% and T: 28.10%, and the G + C content is 43.87%. There are 63 mitochondrial genes including 40 protein-coding genes, 3 rRNA genes and 20 tRNA genes. Additionally, a total of 288 repeats ranging from 31 to 5,301 bp were identified, accounting for 5.7% of the mitogenome. Two large direct repeats (5,301 and 405 bp) within the mitogenome were found for the formation of four subgenomic molecules. A phylogenetic analysis showed that L. acutangula was closely related to other species in Cucurbiaceae. This mitogenome provides useful genetic information for evolutionary studies. |
format | Online Article Text |
id | pubmed-7781975 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77819752021-01-14 The complete mitochondrial genome of Luffa acutangula Ruang-areerate, Panthita Shearman, Jeremy Kongkachana, Wasitthee Jomchai, Nukoon Yoocha, Thippawan U-thoomporn, Sonicha Narong, Nattapol Sheedy, John Robert Mekiyanon, Supat Pootakham, Wirulda Tangphatsornruang, Sithichoke Mitochondrial DNA B Resour Mitogenome Announcement Based on PacBio de novo assembly, we report the first complete mitochondrial genome of Luffa acutangula (460,333 bp) containing nine large chloroplast-derived sequences (1.9–17.3 kb) across the mitogenome. The base composition of the mitogenome in descending order is A: 28.02%, C: 22.04%, G: 21.83% and T: 28.10%, and the G + C content is 43.87%. There are 63 mitochondrial genes including 40 protein-coding genes, 3 rRNA genes and 20 tRNA genes. Additionally, a total of 288 repeats ranging from 31 to 5,301 bp were identified, accounting for 5.7% of the mitogenome. Two large direct repeats (5,301 and 405 bp) within the mitogenome were found for the formation of four subgenomic molecules. A phylogenetic analysis showed that L. acutangula was closely related to other species in Cucurbiaceae. This mitogenome provides useful genetic information for evolutionary studies. Taylor & Francis 2020-08-26 /pmc/articles/PMC7781975/ /pubmed/33458114 http://dx.doi.org/10.1080/23802359.2020.1810165 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Ruang-areerate, Panthita Shearman, Jeremy Kongkachana, Wasitthee Jomchai, Nukoon Yoocha, Thippawan U-thoomporn, Sonicha Narong, Nattapol Sheedy, John Robert Mekiyanon, Supat Pootakham, Wirulda Tangphatsornruang, Sithichoke The complete mitochondrial genome of Luffa acutangula |
title | The complete mitochondrial genome of Luffa acutangula |
title_full | The complete mitochondrial genome of Luffa acutangula |
title_fullStr | The complete mitochondrial genome of Luffa acutangula |
title_full_unstemmed | The complete mitochondrial genome of Luffa acutangula |
title_short | The complete mitochondrial genome of Luffa acutangula |
title_sort | complete mitochondrial genome of luffa acutangula |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781975/ https://www.ncbi.nlm.nih.gov/pubmed/33458114 http://dx.doi.org/10.1080/23802359.2020.1810165 |
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