Cargando…
The complete chloroplast genome sequence of Viola prionantha (Violaceae)
Viola Prionantha belongs to the family Violaceae. It has been widely used for a traditional Chinese herb with antibacterial activity and is grown as an early spring ornamental species in China. In this study, we determined the complete chloroplast genome sequence of V. prionantha which forms a circu...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781978/ https://www.ncbi.nlm.nih.gov/pubmed/33457923 http://dx.doi.org/10.1080/23802359.2020.1788456 |
_version_ | 1783631793031741440 |
---|---|
author | Duan, Chunyan Zhang, Kay Duan, YiZhong |
author_facet | Duan, Chunyan Zhang, Kay Duan, YiZhong |
author_sort | Duan, Chunyan |
collection | PubMed |
description | Viola Prionantha belongs to the family Violaceae. It has been widely used for a traditional Chinese herb with antibacterial activity and is grown as an early spring ornamental species in China. In this study, we determined the complete chloroplast genome sequence of V. prionantha which forms a circular structure. The whole chloroplast genome was 156,501 bp in length, consisting of a pair of inverted repeats (IR) of 26,404 bp, a large single-copy (LSC) region of 85,689 bp, and a small single-copy (SSC) region of 18,004 bp. We annotated 131 genes, including 84 coding sequences, 8 rRNA sequences, 37 tRNA sequences and 2 pesudogenes. Among the annotated genes, 17 genes contained one or two introns. Furthermore, a phylogenetic analysis revealed that V. prionantha and V. seoulensis clustered together as sisters to other Violaceae species. |
format | Online Article Text |
id | pubmed-7781978 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77819782021-01-14 The complete chloroplast genome sequence of Viola prionantha (Violaceae) Duan, Chunyan Zhang, Kay Duan, YiZhong Mitochondrial DNA B Resour Mitogenome Announcement Viola Prionantha belongs to the family Violaceae. It has been widely used for a traditional Chinese herb with antibacterial activity and is grown as an early spring ornamental species in China. In this study, we determined the complete chloroplast genome sequence of V. prionantha which forms a circular structure. The whole chloroplast genome was 156,501 bp in length, consisting of a pair of inverted repeats (IR) of 26,404 bp, a large single-copy (LSC) region of 85,689 bp, and a small single-copy (SSC) region of 18,004 bp. We annotated 131 genes, including 84 coding sequences, 8 rRNA sequences, 37 tRNA sequences and 2 pesudogenes. Among the annotated genes, 17 genes contained one or two introns. Furthermore, a phylogenetic analysis revealed that V. prionantha and V. seoulensis clustered together as sisters to other Violaceae species. Taylor & Francis 2020-07-09 /pmc/articles/PMC7781978/ /pubmed/33457923 http://dx.doi.org/10.1080/23802359.2020.1788456 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Duan, Chunyan Zhang, Kay Duan, YiZhong The complete chloroplast genome sequence of Viola prionantha (Violaceae) |
title | The complete chloroplast genome sequence of Viola prionantha (Violaceae) |
title_full | The complete chloroplast genome sequence of Viola prionantha (Violaceae) |
title_fullStr | The complete chloroplast genome sequence of Viola prionantha (Violaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Viola prionantha (Violaceae) |
title_short | The complete chloroplast genome sequence of Viola prionantha (Violaceae) |
title_sort | complete chloroplast genome sequence of viola prionantha (violaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781978/ https://www.ncbi.nlm.nih.gov/pubmed/33457923 http://dx.doi.org/10.1080/23802359.2020.1788456 |
work_keys_str_mv | AT duanchunyan thecompletechloroplastgenomesequenceofviolaprionanthaviolaceae AT zhangkay thecompletechloroplastgenomesequenceofviolaprionanthaviolaceae AT duanyizhong thecompletechloroplastgenomesequenceofviolaprionanthaviolaceae AT duanchunyan completechloroplastgenomesequenceofviolaprionanthaviolaceae AT zhangkay completechloroplastgenomesequenceofviolaprionanthaviolaceae AT duanyizhong completechloroplastgenomesequenceofviolaprionanthaviolaceae |