Characterization of the complete chloroplast genome of Yuanjiang wild Ichang papeda (Citrus cavaleriei) in China

Ichang papeda (Citrus cavaleriei) is an endemic perennial plant in China. In this study, we assembled and annotated the complete chloroplast genome of Yuanjiang wild Ichang papeda using Illumina Hiseq-2500 sequencing data. The chloroplast genome is constituted of 160,996 bp, containing a 87,634 bp l...

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Autores principales: Zhang, Zi-hao, Long, Chun-rui, Jiang, Yan, Yang, Shi-zao, Zhao, Jun, Wang, Shao-Hua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781987/
https://www.ncbi.nlm.nih.gov/pubmed/33458165
http://dx.doi.org/10.1080/23802359.2020.1820397
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author Zhang, Zi-hao
Long, Chun-rui
Jiang, Yan
Yang, Shi-zao
Zhao, Jun
Wang, Shao-Hua
author_facet Zhang, Zi-hao
Long, Chun-rui
Jiang, Yan
Yang, Shi-zao
Zhao, Jun
Wang, Shao-Hua
author_sort Zhang, Zi-hao
collection PubMed
description Ichang papeda (Citrus cavaleriei) is an endemic perennial plant in China. In this study, we assembled and annotated the complete chloroplast genome of Yuanjiang wild Ichang papeda using Illumina Hiseq-2500 sequencing data. The chloroplast genome is constituted of 160,996 bp, containing a 87,634 bp large single-copy region, a 18,762 bp small single-copy region, and a pair of 27,300 bp inverted repeat regions. The chloroplast genome contains 114 unique genes, including 80 protein-coding genes, 30 tRNAs and 4 rRNAs. Phylogenetic analysis showed that the relationship between the chloroplast gennomes of C. cavaleriei and C. reticulata is the closest, which consistently support their chloroplast relationships.
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spelling pubmed-77819872021-01-14 Characterization of the complete chloroplast genome of Yuanjiang wild Ichang papeda (Citrus cavaleriei) in China Zhang, Zi-hao Long, Chun-rui Jiang, Yan Yang, Shi-zao Zhao, Jun Wang, Shao-Hua Mitochondrial DNA B Resour Mitogenome Announcement Ichang papeda (Citrus cavaleriei) is an endemic perennial plant in China. In this study, we assembled and annotated the complete chloroplast genome of Yuanjiang wild Ichang papeda using Illumina Hiseq-2500 sequencing data. The chloroplast genome is constituted of 160,996 bp, containing a 87,634 bp large single-copy region, a 18,762 bp small single-copy region, and a pair of 27,300 bp inverted repeat regions. The chloroplast genome contains 114 unique genes, including 80 protein-coding genes, 30 tRNAs and 4 rRNAs. Phylogenetic analysis showed that the relationship between the chloroplast gennomes of C. cavaleriei and C. reticulata is the closest, which consistently support their chloroplast relationships. Taylor & Francis 2020-09-16 /pmc/articles/PMC7781987/ /pubmed/33458165 http://dx.doi.org/10.1080/23802359.2020.1820397 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhang, Zi-hao
Long, Chun-rui
Jiang, Yan
Yang, Shi-zao
Zhao, Jun
Wang, Shao-Hua
Characterization of the complete chloroplast genome of Yuanjiang wild Ichang papeda (Citrus cavaleriei) in China
title Characterization of the complete chloroplast genome of Yuanjiang wild Ichang papeda (Citrus cavaleriei) in China
title_full Characterization of the complete chloroplast genome of Yuanjiang wild Ichang papeda (Citrus cavaleriei) in China
title_fullStr Characterization of the complete chloroplast genome of Yuanjiang wild Ichang papeda (Citrus cavaleriei) in China
title_full_unstemmed Characterization of the complete chloroplast genome of Yuanjiang wild Ichang papeda (Citrus cavaleriei) in China
title_short Characterization of the complete chloroplast genome of Yuanjiang wild Ichang papeda (Citrus cavaleriei) in China
title_sort characterization of the complete chloroplast genome of yuanjiang wild ichang papeda (citrus cavaleriei) in china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781987/
https://www.ncbi.nlm.nih.gov/pubmed/33458165
http://dx.doi.org/10.1080/23802359.2020.1820397
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