Characterization of the complete chloroplast genome of Tilia taishanensis S. B. Liang (Tiliaceae)

The complete chloroplast genome of an endangered endemic species in China Tilia taishanensis was sequenced with Illumina HiSeq 2000 platform. It was a typical quadruple structure as other plants of Tilia with 162,803 bp in length, including a large single copy (LSC: 91,114 bp) region and a small sin...

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Autores principales: Lu, Yi-Zeng, Li, Wen-Qing, Wang, Ning, Wang, Yan, Han, Yi, Sun, Tao, Liu, Li-Jiang, Xie, Xiao-Man, Wang, Yin-Hua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781993/
https://www.ncbi.nlm.nih.gov/pubmed/33457919
http://dx.doi.org/10.1080/23802359.2020.1788430
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author Lu, Yi-Zeng
Li, Wen-Qing
Wang, Ning
Wang, Yan
Han, Yi
Sun, Tao
Liu, Li-Jiang
Xie, Xiao-Man
Wang, Yin-Hua
author_facet Lu, Yi-Zeng
Li, Wen-Qing
Wang, Ning
Wang, Yan
Han, Yi
Sun, Tao
Liu, Li-Jiang
Xie, Xiao-Man
Wang, Yin-Hua
author_sort Lu, Yi-Zeng
collection PubMed
description The complete chloroplast genome of an endangered endemic species in China Tilia taishanensis was sequenced with Illumina HiSeq 2000 platform. It was a typical quadruple structure as other plants of Tilia with 162,803 bp in length, including a large single copy (LSC: 91,114 bp) region and a small single copy (SSC: 20,379 bp) which were separated by a pair of inverted repeats (IRa, b: 25,655 bp) region. The overall GC content is 36.5%. A total of 129 genes was annotated which contained 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. ML Phylogenetic analysis compared with 33 expressed chloroplast genomes revealed that T. taishanensis was a sister to other Tilia species.
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spelling pubmed-77819932021-01-14 Characterization of the complete chloroplast genome of Tilia taishanensis S. B. Liang (Tiliaceae) Lu, Yi-Zeng Li, Wen-Qing Wang, Ning Wang, Yan Han, Yi Sun, Tao Liu, Li-Jiang Xie, Xiao-Man Wang, Yin-Hua Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome of an endangered endemic species in China Tilia taishanensis was sequenced with Illumina HiSeq 2000 platform. It was a typical quadruple structure as other plants of Tilia with 162,803 bp in length, including a large single copy (LSC: 91,114 bp) region and a small single copy (SSC: 20,379 bp) which were separated by a pair of inverted repeats (IRa, b: 25,655 bp) region. The overall GC content is 36.5%. A total of 129 genes was annotated which contained 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. ML Phylogenetic analysis compared with 33 expressed chloroplast genomes revealed that T. taishanensis was a sister to other Tilia species. Taylor & Francis 2020-07-09 /pmc/articles/PMC7781993/ /pubmed/33457919 http://dx.doi.org/10.1080/23802359.2020.1788430 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Lu, Yi-Zeng
Li, Wen-Qing
Wang, Ning
Wang, Yan
Han, Yi
Sun, Tao
Liu, Li-Jiang
Xie, Xiao-Man
Wang, Yin-Hua
Characterization of the complete chloroplast genome of Tilia taishanensis S. B. Liang (Tiliaceae)
title Characterization of the complete chloroplast genome of Tilia taishanensis S. B. Liang (Tiliaceae)
title_full Characterization of the complete chloroplast genome of Tilia taishanensis S. B. Liang (Tiliaceae)
title_fullStr Characterization of the complete chloroplast genome of Tilia taishanensis S. B. Liang (Tiliaceae)
title_full_unstemmed Characterization of the complete chloroplast genome of Tilia taishanensis S. B. Liang (Tiliaceae)
title_short Characterization of the complete chloroplast genome of Tilia taishanensis S. B. Liang (Tiliaceae)
title_sort characterization of the complete chloroplast genome of tilia taishanensis s. b. liang (tiliaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781993/
https://www.ncbi.nlm.nih.gov/pubmed/33457919
http://dx.doi.org/10.1080/23802359.2020.1788430
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