The complete chloroplast genome of a critically endangered tree species, Hopea reticulata (Dipterocarpaceae)

Hopea reticulata Tardieu is a critically endangered tree species distributed in limited regions in Thailand, Vietnam and Hainan Island of China. In this study, we reported the complete chloroplast genome sequence of H. reticulata assembled from pair-end reads generated by Illumina sequencing. The ci...

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Detalles Bibliográficos
Autores principales: Ma, Xiang, Cai, Ying, Tang, Liang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782000/
https://www.ncbi.nlm.nih.gov/pubmed/33458242
http://dx.doi.org/10.1080/23802359.2020.1829123
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author Ma, Xiang
Cai, Ying
Tang, Liang
author_facet Ma, Xiang
Cai, Ying
Tang, Liang
author_sort Ma, Xiang
collection PubMed
description Hopea reticulata Tardieu is a critically endangered tree species distributed in limited regions in Thailand, Vietnam and Hainan Island of China. In this study, we reported the complete chloroplast genome sequence of H. reticulata assembled from pair-end reads generated by Illumina sequencing. The circular chloroplast genome is 151,407 bp in length and comprises a large single copy region of 84,352 bp, a small single copy region of 19,733 bp, and a pair of inverted repeats of 23,661 bp each. The complete genome encodes 129 functional genes, including 83 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The overall GC content of the chloroplast genome was 37.4%. Phylogenetic analysis showed that H. reticulata is sister to H. hainanensis with strong bootstrap support.
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spelling pubmed-77820002021-01-14 The complete chloroplast genome of a critically endangered tree species, Hopea reticulata (Dipterocarpaceae) Ma, Xiang Cai, Ying Tang, Liang Mitochondrial DNA B Resour Mitogenome Announcement Hopea reticulata Tardieu is a critically endangered tree species distributed in limited regions in Thailand, Vietnam and Hainan Island of China. In this study, we reported the complete chloroplast genome sequence of H. reticulata assembled from pair-end reads generated by Illumina sequencing. The circular chloroplast genome is 151,407 bp in length and comprises a large single copy region of 84,352 bp, a small single copy region of 19,733 bp, and a pair of inverted repeats of 23,661 bp each. The complete genome encodes 129 functional genes, including 83 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The overall GC content of the chloroplast genome was 37.4%. Phylogenetic analysis showed that H. reticulata is sister to H. hainanensis with strong bootstrap support. Taylor & Francis 2020-10-21 /pmc/articles/PMC7782000/ /pubmed/33458242 http://dx.doi.org/10.1080/23802359.2020.1829123 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Ma, Xiang
Cai, Ying
Tang, Liang
The complete chloroplast genome of a critically endangered tree species, Hopea reticulata (Dipterocarpaceae)
title The complete chloroplast genome of a critically endangered tree species, Hopea reticulata (Dipterocarpaceae)
title_full The complete chloroplast genome of a critically endangered tree species, Hopea reticulata (Dipterocarpaceae)
title_fullStr The complete chloroplast genome of a critically endangered tree species, Hopea reticulata (Dipterocarpaceae)
title_full_unstemmed The complete chloroplast genome of a critically endangered tree species, Hopea reticulata (Dipterocarpaceae)
title_short The complete chloroplast genome of a critically endangered tree species, Hopea reticulata (Dipterocarpaceae)
title_sort complete chloroplast genome of a critically endangered tree species, hopea reticulata (dipterocarpaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782000/
https://www.ncbi.nlm.nih.gov/pubmed/33458242
http://dx.doi.org/10.1080/23802359.2020.1829123
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