The complete chloroplast genome of Geodorum eulophioides (Orchidaceae)

Geodorum eulophioides Schltr., is a critically Endangered orchid (IUCN). In this study, we report the first complete chloroplast (cp) genome of G. eulophioides to provide the underlying information for genetic breeding and conservation studies of this species. The cp genome sequence of G. eulophioid...

Descripción completa

Detalles Bibliográficos
Autores principales: Wu, Xin-Yi, Chen, Jian-Bing, Huang, Zhi-Cong, Liu, Wei-Rong, Li, Ting-Zhang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782022/
https://www.ncbi.nlm.nih.gov/pubmed/33457831
http://dx.doi.org/10.1080/23802359.2020.1778558
_version_ 1783631803800616960
author Wu, Xin-Yi
Chen, Jian-Bing
Huang, Zhi-Cong
Liu, Wei-Rong
Li, Ting-Zhang
author_facet Wu, Xin-Yi
Chen, Jian-Bing
Huang, Zhi-Cong
Liu, Wei-Rong
Li, Ting-Zhang
author_sort Wu, Xin-Yi
collection PubMed
description Geodorum eulophioides Schltr., is a critically Endangered orchid (IUCN). In this study, we report the first complete chloroplast (cp) genome of G. eulophioides to provide the underlying information for genetic breeding and conservation studies of this species. The cp genome sequence of G. eulophioides is 149,466 bp in length, which contains one large single-copy region (LSC, 85,436 bp), one small single-copy region (SSC, 14,086 bp), and two inverted repeat regions (IRs, 24,972 bp). The cp genome encoded 177 genes, of which 106 were unique genes (78 protein-coding genes, 24 tRNAs, and 4 rRNAs). Phylogenetic analysis showed that G. eulophioides is closely related to the genera Eulophia.
format Online
Article
Text
id pubmed-7782022
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77820222021-01-14 The complete chloroplast genome of Geodorum eulophioides (Orchidaceae) Wu, Xin-Yi Chen, Jian-Bing Huang, Zhi-Cong Liu, Wei-Rong Li, Ting-Zhang Mitochondrial DNA B Resour Mitogenome Announcement Geodorum eulophioides Schltr., is a critically Endangered orchid (IUCN). In this study, we report the first complete chloroplast (cp) genome of G. eulophioides to provide the underlying information for genetic breeding and conservation studies of this species. The cp genome sequence of G. eulophioides is 149,466 bp in length, which contains one large single-copy region (LSC, 85,436 bp), one small single-copy region (SSC, 14,086 bp), and two inverted repeat regions (IRs, 24,972 bp). The cp genome encoded 177 genes, of which 106 were unique genes (78 protein-coding genes, 24 tRNAs, and 4 rRNAs). Phylogenetic analysis showed that G. eulophioides is closely related to the genera Eulophia. Taylor & Francis 2020-06-17 /pmc/articles/PMC7782022/ /pubmed/33457831 http://dx.doi.org/10.1080/23802359.2020.1778558 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wu, Xin-Yi
Chen, Jian-Bing
Huang, Zhi-Cong
Liu, Wei-Rong
Li, Ting-Zhang
The complete chloroplast genome of Geodorum eulophioides (Orchidaceae)
title The complete chloroplast genome of Geodorum eulophioides (Orchidaceae)
title_full The complete chloroplast genome of Geodorum eulophioides (Orchidaceae)
title_fullStr The complete chloroplast genome of Geodorum eulophioides (Orchidaceae)
title_full_unstemmed The complete chloroplast genome of Geodorum eulophioides (Orchidaceae)
title_short The complete chloroplast genome of Geodorum eulophioides (Orchidaceae)
title_sort complete chloroplast genome of geodorum eulophioides (orchidaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782022/
https://www.ncbi.nlm.nih.gov/pubmed/33457831
http://dx.doi.org/10.1080/23802359.2020.1778558
work_keys_str_mv AT wuxinyi thecompletechloroplastgenomeofgeodorumeulophioidesorchidaceae
AT chenjianbing thecompletechloroplastgenomeofgeodorumeulophioidesorchidaceae
AT huangzhicong thecompletechloroplastgenomeofgeodorumeulophioidesorchidaceae
AT liuweirong thecompletechloroplastgenomeofgeodorumeulophioidesorchidaceae
AT litingzhang thecompletechloroplastgenomeofgeodorumeulophioidesorchidaceae
AT wuxinyi completechloroplastgenomeofgeodorumeulophioidesorchidaceae
AT chenjianbing completechloroplastgenomeofgeodorumeulophioidesorchidaceae
AT huangzhicong completechloroplastgenomeofgeodorumeulophioidesorchidaceae
AT liuweirong completechloroplastgenomeofgeodorumeulophioidesorchidaceae
AT litingzhang completechloroplastgenomeofgeodorumeulophioidesorchidaceae

Ejemplares similares