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Complete plastome sequence of Cymbidium tortisepalum var. longibracteatum (Y.S.Wu & S.C.Chen) S.C.Chen & Z.J.Liu (Orchidaceae): an endangered (EN) plant species in Southwest China

Cymbidium tortisepalum (Orchidaceae) has been ranked as an endangered (EN) herb species in China. In this study, we report and characterize the complete plastid genome sequence of C. tortisepalum var. longibracteatum in order to provide genomic resources helpful for promoting its conservation and ga...

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Autores principales: Chen, Da-Juan, Wang, Hong-Xin, Zhu, Zhi-Xin, Wang, Hua-Feng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782035/
https://www.ncbi.nlm.nih.gov/pubmed/33458104
http://dx.doi.org/10.1080/23802359.2020.1810157
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author Chen, Da-Juan
Wang, Hong-Xin
Zhu, Zhi-Xin
Wang, Hua-Feng
author_facet Chen, Da-Juan
Wang, Hong-Xin
Zhu, Zhi-Xin
Wang, Hua-Feng
author_sort Chen, Da-Juan
collection PubMed
description Cymbidium tortisepalum (Orchidaceae) has been ranked as an endangered (EN) herb species in China. In this study, we report and characterize the complete plastid genome sequence of C. tortisepalum var. longibracteatum in order to provide genomic resources helpful for promoting its conservation and garden utilization. The complete plastome is 150,198 bp in length and contains the typical quadripartite structure of angiosperm, including two Inverted Repeat (IRs) regions of 25,682 bp, a Large Single-Copy (LSC) region of 85,035 bp and a Small Single-Copy (SSC) region of 13,799 bp. The plastome contains 111 genes, consisting of 77 unique protein-coding genes, 30 unique tRNA gene and 4 unique rRNA genes. The overall A/T content in the plastome of C. tortisepalum var. longibracteatum is 62.90%. The complete plastome sequence of C. tortisepalum var. longibracteatum will provide a useful resource for the conservation and garden utilization of this species as well as for the phylogenetic studies of Orchidaceae.
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spelling pubmed-77820352021-01-14 Complete plastome sequence of Cymbidium tortisepalum var. longibracteatum (Y.S.Wu & S.C.Chen) S.C.Chen & Z.J.Liu (Orchidaceae): an endangered (EN) plant species in Southwest China Chen, Da-Juan Wang, Hong-Xin Zhu, Zhi-Xin Wang, Hua-Feng Mitochondrial DNA B Resour Mitogenome Announcement Cymbidium tortisepalum (Orchidaceae) has been ranked as an endangered (EN) herb species in China. In this study, we report and characterize the complete plastid genome sequence of C. tortisepalum var. longibracteatum in order to provide genomic resources helpful for promoting its conservation and garden utilization. The complete plastome is 150,198 bp in length and contains the typical quadripartite structure of angiosperm, including two Inverted Repeat (IRs) regions of 25,682 bp, a Large Single-Copy (LSC) region of 85,035 bp and a Small Single-Copy (SSC) region of 13,799 bp. The plastome contains 111 genes, consisting of 77 unique protein-coding genes, 30 unique tRNA gene and 4 unique rRNA genes. The overall A/T content in the plastome of C. tortisepalum var. longibracteatum is 62.90%. The complete plastome sequence of C. tortisepalum var. longibracteatum will provide a useful resource for the conservation and garden utilization of this species as well as for the phylogenetic studies of Orchidaceae. Taylor & Francis 2020-08-17 /pmc/articles/PMC7782035/ /pubmed/33458104 http://dx.doi.org/10.1080/23802359.2020.1810157 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Chen, Da-Juan
Wang, Hong-Xin
Zhu, Zhi-Xin
Wang, Hua-Feng
Complete plastome sequence of Cymbidium tortisepalum var. longibracteatum (Y.S.Wu & S.C.Chen) S.C.Chen & Z.J.Liu (Orchidaceae): an endangered (EN) plant species in Southwest China
title Complete plastome sequence of Cymbidium tortisepalum var. longibracteatum (Y.S.Wu & S.C.Chen) S.C.Chen & Z.J.Liu (Orchidaceae): an endangered (EN) plant species in Southwest China
title_full Complete plastome sequence of Cymbidium tortisepalum var. longibracteatum (Y.S.Wu & S.C.Chen) S.C.Chen & Z.J.Liu (Orchidaceae): an endangered (EN) plant species in Southwest China
title_fullStr Complete plastome sequence of Cymbidium tortisepalum var. longibracteatum (Y.S.Wu & S.C.Chen) S.C.Chen & Z.J.Liu (Orchidaceae): an endangered (EN) plant species in Southwest China
title_full_unstemmed Complete plastome sequence of Cymbidium tortisepalum var. longibracteatum (Y.S.Wu & S.C.Chen) S.C.Chen & Z.J.Liu (Orchidaceae): an endangered (EN) plant species in Southwest China
title_short Complete plastome sequence of Cymbidium tortisepalum var. longibracteatum (Y.S.Wu & S.C.Chen) S.C.Chen & Z.J.Liu (Orchidaceae): an endangered (EN) plant species in Southwest China
title_sort complete plastome sequence of cymbidium tortisepalum var. longibracteatum (y.s.wu & s.c.chen) s.c.chen & z.j.liu (orchidaceae): an endangered (en) plant species in southwest china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782035/
https://www.ncbi.nlm.nih.gov/pubmed/33458104
http://dx.doi.org/10.1080/23802359.2020.1810157
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