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Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Carya ovata
Carya ovata is a slow-growing, long-lived deciduous species that belongs to section Carya of genus Carya. In this study, we de novo assembled the complete chloroplast genome of C. ovata, and analyzed its phylogenetic relationship. The circular genome was 160,765 bp in length, comprising a large sing...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782038/ https://www.ncbi.nlm.nih.gov/pubmed/33458062 http://dx.doi.org/10.1080/23802359.2020.1797584 |
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author | Xu, Mengyang Lyu, Yunzhou Guo, Zhongren Mo, Zhenghai |
author_facet | Xu, Mengyang Lyu, Yunzhou Guo, Zhongren Mo, Zhenghai |
author_sort | Xu, Mengyang |
collection | PubMed |
description | Carya ovata is a slow-growing, long-lived deciduous species that belongs to section Carya of genus Carya. In this study, we de novo assembled the complete chloroplast genome of C. ovata, and analyzed its phylogenetic relationship. The circular genome was 160,765 bp in length, comprising a large single-copy region (89,975 bp), a small single-copy region (18,788 bp), and a pair of inverted repeat regions (26,001 bp each). The chloroplast genome was predicted to contain 131 genes, including 83 protein-coding genes, 40 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. Overall, the GC content of the chloroplast genome was 36.16%. Phylogenetic analysis suggested that C. ovata was closely related to C. illinoinensis, a representative of section Apocarya within the genus Carya. |
format | Online Article Text |
id | pubmed-7782038 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77820382021-01-14 Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Carya ovata Xu, Mengyang Lyu, Yunzhou Guo, Zhongren Mo, Zhenghai Mitochondrial DNA B Resour Mitogenome Announcement Carya ovata is a slow-growing, long-lived deciduous species that belongs to section Carya of genus Carya. In this study, we de novo assembled the complete chloroplast genome of C. ovata, and analyzed its phylogenetic relationship. The circular genome was 160,765 bp in length, comprising a large single-copy region (89,975 bp), a small single-copy region (18,788 bp), and a pair of inverted repeat regions (26,001 bp each). The chloroplast genome was predicted to contain 131 genes, including 83 protein-coding genes, 40 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. Overall, the GC content of the chloroplast genome was 36.16%. Phylogenetic analysis suggested that C. ovata was closely related to C. illinoinensis, a representative of section Apocarya within the genus Carya. Taylor & Francis 2020-07-30 /pmc/articles/PMC7782038/ /pubmed/33458062 http://dx.doi.org/10.1080/23802359.2020.1797584 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Xu, Mengyang Lyu, Yunzhou Guo, Zhongren Mo, Zhenghai Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Carya ovata |
title | Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Carya ovata |
title_full | Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Carya ovata |
title_fullStr | Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Carya ovata |
title_full_unstemmed | Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Carya ovata |
title_short | Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Carya ovata |
title_sort | characterization and phylogenetic relationships analysis of the complete chloroplast genome of carya ovata |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782038/ https://www.ncbi.nlm.nih.gov/pubmed/33458062 http://dx.doi.org/10.1080/23802359.2020.1797584 |
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