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Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Carya ovata

Carya ovata is a slow-growing, long-lived deciduous species that belongs to section Carya of genus Carya. In this study, we de novo assembled the complete chloroplast genome of C. ovata, and analyzed its phylogenetic relationship. The circular genome was 160,765 bp in length, comprising a large sing...

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Detalles Bibliográficos
Autores principales: Xu, Mengyang, Lyu, Yunzhou, Guo, Zhongren, Mo, Zhenghai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782038/
https://www.ncbi.nlm.nih.gov/pubmed/33458062
http://dx.doi.org/10.1080/23802359.2020.1797584
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author Xu, Mengyang
Lyu, Yunzhou
Guo, Zhongren
Mo, Zhenghai
author_facet Xu, Mengyang
Lyu, Yunzhou
Guo, Zhongren
Mo, Zhenghai
author_sort Xu, Mengyang
collection PubMed
description Carya ovata is a slow-growing, long-lived deciduous species that belongs to section Carya of genus Carya. In this study, we de novo assembled the complete chloroplast genome of C. ovata, and analyzed its phylogenetic relationship. The circular genome was 160,765 bp in length, comprising a large single-copy region (89,975 bp), a small single-copy region (18,788 bp), and a pair of inverted repeat regions (26,001 bp each). The chloroplast genome was predicted to contain 131 genes, including 83 protein-coding genes, 40 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. Overall, the GC content of the chloroplast genome was 36.16%. Phylogenetic analysis suggested that C. ovata was closely related to C. illinoinensis, a representative of section Apocarya within the genus Carya.
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spelling pubmed-77820382021-01-14 Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Carya ovata Xu, Mengyang Lyu, Yunzhou Guo, Zhongren Mo, Zhenghai Mitochondrial DNA B Resour Mitogenome Announcement Carya ovata is a slow-growing, long-lived deciduous species that belongs to section Carya of genus Carya. In this study, we de novo assembled the complete chloroplast genome of C. ovata, and analyzed its phylogenetic relationship. The circular genome was 160,765 bp in length, comprising a large single-copy region (89,975 bp), a small single-copy region (18,788 bp), and a pair of inverted repeat regions (26,001 bp each). The chloroplast genome was predicted to contain 131 genes, including 83 protein-coding genes, 40 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. Overall, the GC content of the chloroplast genome was 36.16%. Phylogenetic analysis suggested that C. ovata was closely related to C. illinoinensis, a representative of section Apocarya within the genus Carya. Taylor & Francis 2020-07-30 /pmc/articles/PMC7782038/ /pubmed/33458062 http://dx.doi.org/10.1080/23802359.2020.1797584 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Xu, Mengyang
Lyu, Yunzhou
Guo, Zhongren
Mo, Zhenghai
Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Carya ovata
title Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Carya ovata
title_full Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Carya ovata
title_fullStr Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Carya ovata
title_full_unstemmed Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Carya ovata
title_short Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Carya ovata
title_sort characterization and phylogenetic relationships analysis of the complete chloroplast genome of carya ovata
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782038/
https://www.ncbi.nlm.nih.gov/pubmed/33458062
http://dx.doi.org/10.1080/23802359.2020.1797584
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