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The whole mitochondrial genome of Sarcophaga kanoi (Diptera: Sarcophagidae)
Sarcophaga kanoi Park, 1962, a widely distributed flesh fly in Southeast Asia, is important in forensic entomology. Notably, its mitochondrial genome could provide the unique and accurate molecular information in species identification which facilitate forensic practices in estimation of postmortem...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782063/ https://www.ncbi.nlm.nih.gov/pubmed/33457892 http://dx.doi.org/10.1080/23802359.2020.1787272 |
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author | She, Yueting Wang, Chaojun Wang, Weifeng Zeng, Qin Mao, Wei Gu, Xiaoping Yuan, Hao Pan, Xiaoling Wang, Yong |
author_facet | She, Yueting Wang, Chaojun Wang, Weifeng Zeng, Qin Mao, Wei Gu, Xiaoping Yuan, Hao Pan, Xiaoling Wang, Yong |
author_sort | She, Yueting |
collection | PubMed |
description | Sarcophaga kanoi Park, 1962, a widely distributed flesh fly in Southeast Asia, is important in forensic entomology. Notably, its mitochondrial genome could provide the unique and accurate molecular information in species identification which facilitate forensic practices in estimation of postmortem interval especially in putrefied cadaver cases. Thus, we sequenced and characterized the whole mitochondrial genome (mitogenome) of S. kanoi for the first time, which was collected from Southern China in this study. The 15,319 bp mitogenome contained 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNA), 2 ribosomal RNA genes (rRNA), and a putative control region. The total nucleotide composition of this circular genome was 39.7% for A, 9.3% for G, 14.2% for C, and 36.8% for T. To better understand the genetic relationship, the phylogenetic analysis was constructed according to the 13 PCGs sequence of S. kanoi and other 11 species. The phylogenetic tree showed that the S. kanoi was placed in a sub-clade with S. similis. Our study updated the new genetic information for dipteran mitogenomes, which could broaden the background knowledge for forensic entomology, molecular genetics and developmental biology. It has the potential application on the species identification using genetic markers. |
format | Online Article Text |
id | pubmed-7782063 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77820632021-01-14 The whole mitochondrial genome of Sarcophaga kanoi (Diptera: Sarcophagidae) She, Yueting Wang, Chaojun Wang, Weifeng Zeng, Qin Mao, Wei Gu, Xiaoping Yuan, Hao Pan, Xiaoling Wang, Yong Mitochondrial DNA B Resour Mitogenome Announcement Sarcophaga kanoi Park, 1962, a widely distributed flesh fly in Southeast Asia, is important in forensic entomology. Notably, its mitochondrial genome could provide the unique and accurate molecular information in species identification which facilitate forensic practices in estimation of postmortem interval especially in putrefied cadaver cases. Thus, we sequenced and characterized the whole mitochondrial genome (mitogenome) of S. kanoi for the first time, which was collected from Southern China in this study. The 15,319 bp mitogenome contained 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNA), 2 ribosomal RNA genes (rRNA), and a putative control region. The total nucleotide composition of this circular genome was 39.7% for A, 9.3% for G, 14.2% for C, and 36.8% for T. To better understand the genetic relationship, the phylogenetic analysis was constructed according to the 13 PCGs sequence of S. kanoi and other 11 species. The phylogenetic tree showed that the S. kanoi was placed in a sub-clade with S. similis. Our study updated the new genetic information for dipteran mitogenomes, which could broaden the background knowledge for forensic entomology, molecular genetics and developmental biology. It has the potential application on the species identification using genetic markers. Taylor & Francis 2020-07-02 /pmc/articles/PMC7782063/ /pubmed/33457892 http://dx.doi.org/10.1080/23802359.2020.1787272 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement She, Yueting Wang, Chaojun Wang, Weifeng Zeng, Qin Mao, Wei Gu, Xiaoping Yuan, Hao Pan, Xiaoling Wang, Yong The whole mitochondrial genome of Sarcophaga kanoi (Diptera: Sarcophagidae) |
title | The whole mitochondrial genome of Sarcophaga kanoi (Diptera: Sarcophagidae) |
title_full | The whole mitochondrial genome of Sarcophaga kanoi (Diptera: Sarcophagidae) |
title_fullStr | The whole mitochondrial genome of Sarcophaga kanoi (Diptera: Sarcophagidae) |
title_full_unstemmed | The whole mitochondrial genome of Sarcophaga kanoi (Diptera: Sarcophagidae) |
title_short | The whole mitochondrial genome of Sarcophaga kanoi (Diptera: Sarcophagidae) |
title_sort | whole mitochondrial genome of sarcophaga kanoi (diptera: sarcophagidae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782063/ https://www.ncbi.nlm.nih.gov/pubmed/33457892 http://dx.doi.org/10.1080/23802359.2020.1787272 |
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