Characterization of the complete chloroplast genome of Citrus hongheensis, a key protected wild plant in Yunnan province of China

Citrus hongheensis is a key protected wild plant endemic to the Honghe river region in southeastern Yunnan, China. In the present study, its chloroplast genome was successfully assembled and annotated based on the Illumina Hiseq-2500 whole genome re-sequencing data. The chloroplast genome is 160,275...

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Detalles Bibliográficos
Autores principales: Zhang, Zi-hao, Long, Chun-rui, Jiang, Yan, Bei, Xue-jun, Wang, Shaohua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782067/
https://www.ncbi.nlm.nih.gov/pubmed/33458224
http://dx.doi.org/10.1080/23802359.2020.1825137
Descripción
Sumario:Citrus hongheensis is a key protected wild plant endemic to the Honghe river region in southeastern Yunnan, China. In the present study, its chloroplast genome was successfully assembled and annotated based on the Illumina Hiseq-2500 whole genome re-sequencing data. The chloroplast genome is 160,275 bp in size. Its large single copy region, small single copy region and inverted repeat region is 87,886 bp, 18,387 bp and 27,001 bp, respectively. Totally, 114 unique genes, including 80 protein-coding genes, 30 tRNAs and 4 rRNAs, were identified from the C. hongheensis chloroplast genome. According to the phylogenetic analysis result, the relationship between the chloroplast genome of C. hongheensis and C. maxima was found to be the closest.

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