Characterization of the complete chloroplast genome of Citrus hongheensis, a key protected wild plant in Yunnan province of China

Citrus hongheensis is a key protected wild plant endemic to the Honghe river region in southeastern Yunnan, China. In the present study, its chloroplast genome was successfully assembled and annotated based on the Illumina Hiseq-2500 whole genome re-sequencing data. The chloroplast genome is 160,275...

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Autores principales: Zhang, Zi-hao, Long, Chun-rui, Jiang, Yan, Bei, Xue-jun, Wang, Shaohua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782067/
https://www.ncbi.nlm.nih.gov/pubmed/33458224
http://dx.doi.org/10.1080/23802359.2020.1825137
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author Zhang, Zi-hao
Long, Chun-rui
Jiang, Yan
Bei, Xue-jun
Wang, Shaohua
author_facet Zhang, Zi-hao
Long, Chun-rui
Jiang, Yan
Bei, Xue-jun
Wang, Shaohua
author_sort Zhang, Zi-hao
collection PubMed
description Citrus hongheensis is a key protected wild plant endemic to the Honghe river region in southeastern Yunnan, China. In the present study, its chloroplast genome was successfully assembled and annotated based on the Illumina Hiseq-2500 whole genome re-sequencing data. The chloroplast genome is 160,275 bp in size. Its large single copy region, small single copy region and inverted repeat region is 87,886 bp, 18,387 bp and 27,001 bp, respectively. Totally, 114 unique genes, including 80 protein-coding genes, 30 tRNAs and 4 rRNAs, were identified from the C. hongheensis chloroplast genome. According to the phylogenetic analysis result, the relationship between the chloroplast genome of C. hongheensis and C. maxima was found to be the closest.
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spelling pubmed-77820672021-01-14 Characterization of the complete chloroplast genome of Citrus hongheensis, a key protected wild plant in Yunnan province of China Zhang, Zi-hao Long, Chun-rui Jiang, Yan Bei, Xue-jun Wang, Shaohua Mitochondrial DNA B Resour Mitogenome Announcement Citrus hongheensis is a key protected wild plant endemic to the Honghe river region in southeastern Yunnan, China. In the present study, its chloroplast genome was successfully assembled and annotated based on the Illumina Hiseq-2500 whole genome re-sequencing data. The chloroplast genome is 160,275 bp in size. Its large single copy region, small single copy region and inverted repeat region is 87,886 bp, 18,387 bp and 27,001 bp, respectively. Totally, 114 unique genes, including 80 protein-coding genes, 30 tRNAs and 4 rRNAs, were identified from the C. hongheensis chloroplast genome. According to the phylogenetic analysis result, the relationship between the chloroplast genome of C. hongheensis and C. maxima was found to be the closest. Taylor & Francis 2020-10-07 /pmc/articles/PMC7782067/ /pubmed/33458224 http://dx.doi.org/10.1080/23802359.2020.1825137 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhang, Zi-hao
Long, Chun-rui
Jiang, Yan
Bei, Xue-jun
Wang, Shaohua
Characterization of the complete chloroplast genome of Citrus hongheensis, a key protected wild plant in Yunnan province of China
title Characterization of the complete chloroplast genome of Citrus hongheensis, a key protected wild plant in Yunnan province of China
title_full Characterization of the complete chloroplast genome of Citrus hongheensis, a key protected wild plant in Yunnan province of China
title_fullStr Characterization of the complete chloroplast genome of Citrus hongheensis, a key protected wild plant in Yunnan province of China
title_full_unstemmed Characterization of the complete chloroplast genome of Citrus hongheensis, a key protected wild plant in Yunnan province of China
title_short Characterization of the complete chloroplast genome of Citrus hongheensis, a key protected wild plant in Yunnan province of China
title_sort characterization of the complete chloroplast genome of citrus hongheensis, a key protected wild plant in yunnan province of china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782067/
https://www.ncbi.nlm.nih.gov/pubmed/33458224
http://dx.doi.org/10.1080/23802359.2020.1825137
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