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The complete mitochondrial and plastid genomes of the invasive marine red alga Caulacanthus okamurae (Caulacanthaceae, Rhodophyta) from Moss Landing, California, USA
Caulacanthus okamurae is an invasive red alga that forms extensive mats in sheltered marine habitats around the world. To determine its genomic structure and genetic relationship to native and other non-native populations of C. okamurae, high-throughput sequencing analysis was performed on an introd...
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Taylor & Francis
2020
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782071/ https://www.ncbi.nlm.nih.gov/pubmed/33457745 http://dx.doi.org/10.1080/23802359.2020.1763870 |
| _version_ | 1783631815976681472 |
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| author | Aguilar, Alejandro Ahumada, Tania J. Amezcua Moreno, Noemi Bohn, Jacob Bustamante, Danilo E. Calderon, Martha S. Cardoso, Edgar Carranza, Rocio Castillo, Maria Cazares, Elizabeth Cazares, Emmanuel Companion, Janelle K. Cruz, Jeanette Cuevas, Neovid De La Torre, Lizbeth Dietz, Daniel P. Fernando, Kathleen M. Garcia, Bryan Gomez, Pamela Gonzales-Miramontes, Bianca Hernandez, Yuviana Huaracha, Kayla Hughey, Jeffery R. Lazaro, Gabriela Zhai Lorenzo, Feifei Medrano, Diana Mendoza, Ailen Mendoza, Daniel Mohssin, Adam Orozco Medina, Jeanette Pacheco, Aislinn Palacios Ruvalcaba, Gustavo Patel, Jankiben Patel, Jatin Patino, Samantha Perez-Alfaro, Karina Ponce, Alejandra N. Poso, Jasmine G. Ramirez, Gabriel Ramirez, Hector A. Resendiz, Nathalie Reyno, Rachelle Rodriguez, Diego Russell, Ian A. Saenz-Verdugo, Paola Carmona, Angel S. Sanchez, Fabian Sheffer, Sabrina X. Solorio, Carmen Soto Trujillo, Alejandra Vasaya, Geraldine S. Velasquez Lopez, Victoria |
| author_facet | Aguilar, Alejandro Ahumada, Tania J. Amezcua Moreno, Noemi Bohn, Jacob Bustamante, Danilo E. Calderon, Martha S. Cardoso, Edgar Carranza, Rocio Castillo, Maria Cazares, Elizabeth Cazares, Emmanuel Companion, Janelle K. Cruz, Jeanette Cuevas, Neovid De La Torre, Lizbeth Dietz, Daniel P. Fernando, Kathleen M. Garcia, Bryan Gomez, Pamela Gonzales-Miramontes, Bianca Hernandez, Yuviana Huaracha, Kayla Hughey, Jeffery R. Lazaro, Gabriela Zhai Lorenzo, Feifei Medrano, Diana Mendoza, Ailen Mendoza, Daniel Mohssin, Adam Orozco Medina, Jeanette Pacheco, Aislinn Palacios Ruvalcaba, Gustavo Patel, Jankiben Patel, Jatin Patino, Samantha Perez-Alfaro, Karina Ponce, Alejandra N. Poso, Jasmine G. Ramirez, Gabriel Ramirez, Hector A. Resendiz, Nathalie Reyno, Rachelle Rodriguez, Diego Russell, Ian A. Saenz-Verdugo, Paola Carmona, Angel S. Sanchez, Fabian Sheffer, Sabrina X. Solorio, Carmen Soto Trujillo, Alejandra Vasaya, Geraldine S. Velasquez Lopez, Victoria |
| collection | PubMed |
| description | Caulacanthus okamurae is an invasive red alga that forms extensive mats in sheltered marine habitats around the world. To determine its genomic structure and genetic relationship to native and other non-native populations of C. okamurae, high-throughput sequencing analysis was performed on an introduced specimen from Bennett Slough, Moss Landing, California, USA. Assembly of 23,146,595 filtered 150 bp paired-end Illumina sequencing reads yielded its complete mitogenome (GenBank accession MT193839) and plastid genome (GenBank accession MT193838). The mitogenome is 25,995 bp in length and contains 50 genes. The plastid genome is 173,516 bp and contains 234 genes. Comparison of the organellar chromosomes to other Gigartinales revealed a high-level of gene synteny. BLAST analysis of marker sequences (rbcL, cox1, cox2) of C. okamurae from Moss Landing identified four identical DNA sequences: one from a specimen from a native population of C. okamurae from South Korea and three from specimens representing invasive populations from France, Spain, and the USA. These genetic results confirm the presence of C. okamurae in central California, USA, and represent the first complete mitogenome and plastid genome from the Caulacanthaceae. |
| format | Online Article Text |
| id | pubmed-7782071 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2020 |
| publisher | Taylor & Francis |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-77820712021-01-14 The complete mitochondrial and plastid genomes of the invasive marine red alga Caulacanthus okamurae (Caulacanthaceae, Rhodophyta) from Moss Landing, California, USA Aguilar, Alejandro Ahumada, Tania J. Amezcua Moreno, Noemi Bohn, Jacob Bustamante, Danilo E. Calderon, Martha S. Cardoso, Edgar Carranza, Rocio Castillo, Maria Cazares, Elizabeth Cazares, Emmanuel Companion, Janelle K. Cruz, Jeanette Cuevas, Neovid De La Torre, Lizbeth Dietz, Daniel P. Fernando, Kathleen M. Garcia, Bryan Gomez, Pamela Gonzales-Miramontes, Bianca Hernandez, Yuviana Huaracha, Kayla Hughey, Jeffery R. Lazaro, Gabriela Zhai Lorenzo, Feifei Medrano, Diana Mendoza, Ailen Mendoza, Daniel Mohssin, Adam Orozco Medina, Jeanette Pacheco, Aislinn Palacios Ruvalcaba, Gustavo Patel, Jankiben Patel, Jatin Patino, Samantha Perez-Alfaro, Karina Ponce, Alejandra N. Poso, Jasmine G. Ramirez, Gabriel Ramirez, Hector A. Resendiz, Nathalie Reyno, Rachelle Rodriguez, Diego Russell, Ian A. Saenz-Verdugo, Paola Carmona, Angel S. Sanchez, Fabian Sheffer, Sabrina X. Solorio, Carmen Soto Trujillo, Alejandra Vasaya, Geraldine S. Velasquez Lopez, Victoria Mitochondrial DNA B Resour Mitogenome Announcement Caulacanthus okamurae is an invasive red alga that forms extensive mats in sheltered marine habitats around the world. To determine its genomic structure and genetic relationship to native and other non-native populations of C. okamurae, high-throughput sequencing analysis was performed on an introduced specimen from Bennett Slough, Moss Landing, California, USA. Assembly of 23,146,595 filtered 150 bp paired-end Illumina sequencing reads yielded its complete mitogenome (GenBank accession MT193839) and plastid genome (GenBank accession MT193838). The mitogenome is 25,995 bp in length and contains 50 genes. The plastid genome is 173,516 bp and contains 234 genes. Comparison of the organellar chromosomes to other Gigartinales revealed a high-level of gene synteny. BLAST analysis of marker sequences (rbcL, cox1, cox2) of C. okamurae from Moss Landing identified four identical DNA sequences: one from a specimen from a native population of C. okamurae from South Korea and three from specimens representing invasive populations from France, Spain, and the USA. These genetic results confirm the presence of C. okamurae in central California, USA, and represent the first complete mitogenome and plastid genome from the Caulacanthaceae. Taylor & Francis 2020-05-13 /pmc/articles/PMC7782071/ /pubmed/33457745 http://dx.doi.org/10.1080/23802359.2020.1763870 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
| spellingShingle | Mitogenome Announcement Aguilar, Alejandro Ahumada, Tania J. Amezcua Moreno, Noemi Bohn, Jacob Bustamante, Danilo E. Calderon, Martha S. Cardoso, Edgar Carranza, Rocio Castillo, Maria Cazares, Elizabeth Cazares, Emmanuel Companion, Janelle K. Cruz, Jeanette Cuevas, Neovid De La Torre, Lizbeth Dietz, Daniel P. Fernando, Kathleen M. Garcia, Bryan Gomez, Pamela Gonzales-Miramontes, Bianca Hernandez, Yuviana Huaracha, Kayla Hughey, Jeffery R. Lazaro, Gabriela Zhai Lorenzo, Feifei Medrano, Diana Mendoza, Ailen Mendoza, Daniel Mohssin, Adam Orozco Medina, Jeanette Pacheco, Aislinn Palacios Ruvalcaba, Gustavo Patel, Jankiben Patel, Jatin Patino, Samantha Perez-Alfaro, Karina Ponce, Alejandra N. Poso, Jasmine G. Ramirez, Gabriel Ramirez, Hector A. Resendiz, Nathalie Reyno, Rachelle Rodriguez, Diego Russell, Ian A. Saenz-Verdugo, Paola Carmona, Angel S. Sanchez, Fabian Sheffer, Sabrina X. Solorio, Carmen Soto Trujillo, Alejandra Vasaya, Geraldine S. Velasquez Lopez, Victoria The complete mitochondrial and plastid genomes of the invasive marine red alga Caulacanthus okamurae (Caulacanthaceae, Rhodophyta) from Moss Landing, California, USA |
| title | The complete mitochondrial and plastid genomes of the invasive marine red alga Caulacanthus okamurae (Caulacanthaceae, Rhodophyta) from Moss Landing, California, USA |
| title_full | The complete mitochondrial and plastid genomes of the invasive marine red alga Caulacanthus okamurae (Caulacanthaceae, Rhodophyta) from Moss Landing, California, USA |
| title_fullStr | The complete mitochondrial and plastid genomes of the invasive marine red alga Caulacanthus okamurae (Caulacanthaceae, Rhodophyta) from Moss Landing, California, USA |
| title_full_unstemmed | The complete mitochondrial and plastid genomes of the invasive marine red alga Caulacanthus okamurae (Caulacanthaceae, Rhodophyta) from Moss Landing, California, USA |
| title_short | The complete mitochondrial and plastid genomes of the invasive marine red alga Caulacanthus okamurae (Caulacanthaceae, Rhodophyta) from Moss Landing, California, USA |
| title_sort | complete mitochondrial and plastid genomes of the invasive marine red alga caulacanthus okamurae (caulacanthaceae, rhodophyta) from moss landing, california, usa |
| topic | Mitogenome Announcement |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782071/ https://www.ncbi.nlm.nih.gov/pubmed/33457745 http://dx.doi.org/10.1080/23802359.2020.1763870 |
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completemitochondrialandplastidgenomesoftheinvasivemarineredalgacaulacanthusokamuraecaulacanthaceaerhodophytafrommosslandingcaliforniausa AT sototrujilloalejandra completemitochondrialandplastidgenomesoftheinvasivemarineredalgacaulacanthusokamuraecaulacanthaceaerhodophytafrommosslandingcaliforniausa AT vasayageraldines completemitochondrialandplastidgenomesoftheinvasivemarineredalgacaulacanthusokamuraecaulacanthaceaerhodophytafrommosslandingcaliforniausa AT velasquezlopezvictoria completemitochondrialandplastidgenomesoftheinvasivemarineredalgacaulacanthusokamuraecaulacanthaceaerhodophytafrommosslandingcaliforniausa |