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The complete mitochondrial and plastid genomes of the invasive marine red alga Caulacanthus okamurae (Caulacanthaceae, Rhodophyta) from Moss Landing, California, USA

Caulacanthus okamurae is an invasive red alga that forms extensive mats in sheltered marine habitats around the world. To determine its genomic structure and genetic relationship to native and other non-native populations of C. okamurae, high-throughput sequencing analysis was performed on an introd...

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Autores principales: Aguilar, Alejandro, Ahumada, Tania J., Amezcua Moreno, Noemi, Bohn, Jacob, Bustamante, Danilo E., Calderon, Martha S., Cardoso, Edgar, Carranza, Rocio, Castillo, Maria, Cazares, Elizabeth, Cazares, Emmanuel, Companion, Janelle K., Cruz, Jeanette, Cuevas, Neovid, De La Torre, Lizbeth, Dietz, Daniel P., Fernando, Kathleen M., Garcia, Bryan, Gomez, Pamela, Gonzales-Miramontes, Bianca, Hernandez, Yuviana, Huaracha, Kayla, Hughey, Jeffery R., Lazaro, Gabriela, Zhai Lorenzo, Feifei, Medrano, Diana, Mendoza, Ailen, Mendoza, Daniel, Mohssin, Adam, Orozco Medina, Jeanette, Pacheco, Aislinn, Palacios Ruvalcaba, Gustavo, Patel, Jankiben, Patel, Jatin, Patino, Samantha, Perez-Alfaro, Karina, Ponce, Alejandra N., Poso, Jasmine G., Ramirez, Gabriel, Ramirez, Hector A., Resendiz, Nathalie, Reyno, Rachelle, Rodriguez, Diego, Russell, Ian A., Saenz-Verdugo, Paola, Carmona, Angel S., Sanchez, Fabian, Sheffer, Sabrina X., Solorio, Carmen, Soto Trujillo, Alejandra, Vasaya, Geraldine S., Velasquez Lopez, Victoria
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782071/
https://www.ncbi.nlm.nih.gov/pubmed/33457745
http://dx.doi.org/10.1080/23802359.2020.1763870
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author Aguilar, Alejandro
Ahumada, Tania J.
Amezcua Moreno, Noemi
Bohn, Jacob
Bustamante, Danilo E.
Calderon, Martha S.
Cardoso, Edgar
Carranza, Rocio
Castillo, Maria
Cazares, Elizabeth
Cazares, Emmanuel
Companion, Janelle K.
Cruz, Jeanette
Cuevas, Neovid
De La Torre, Lizbeth
Dietz, Daniel P.
Fernando, Kathleen M.
Garcia, Bryan
Gomez, Pamela
Gonzales-Miramontes, Bianca
Hernandez, Yuviana
Huaracha, Kayla
Hughey, Jeffery R.
Lazaro, Gabriela
Zhai Lorenzo, Feifei
Medrano, Diana
Mendoza, Ailen
Mendoza, Daniel
Mohssin, Adam
Orozco Medina, Jeanette
Pacheco, Aislinn
Palacios Ruvalcaba, Gustavo
Patel, Jankiben
Patel, Jatin
Patino, Samantha
Perez-Alfaro, Karina
Ponce, Alejandra N.
Poso, Jasmine G.
Ramirez, Gabriel
Ramirez, Hector A.
Resendiz, Nathalie
Reyno, Rachelle
Rodriguez, Diego
Russell, Ian A.
Saenz-Verdugo, Paola
Carmona, Angel S.
Sanchez, Fabian
Sheffer, Sabrina X.
Solorio, Carmen
Soto Trujillo, Alejandra
Vasaya, Geraldine S.
Velasquez Lopez, Victoria
author_facet Aguilar, Alejandro
Ahumada, Tania J.
Amezcua Moreno, Noemi
Bohn, Jacob
Bustamante, Danilo E.
Calderon, Martha S.
Cardoso, Edgar
Carranza, Rocio
Castillo, Maria
Cazares, Elizabeth
Cazares, Emmanuel
Companion, Janelle K.
Cruz, Jeanette
Cuevas, Neovid
De La Torre, Lizbeth
Dietz, Daniel P.
Fernando, Kathleen M.
Garcia, Bryan
Gomez, Pamela
Gonzales-Miramontes, Bianca
Hernandez, Yuviana
Huaracha, Kayla
Hughey, Jeffery R.
Lazaro, Gabriela
Zhai Lorenzo, Feifei
Medrano, Diana
Mendoza, Ailen
Mendoza, Daniel
Mohssin, Adam
Orozco Medina, Jeanette
Pacheco, Aislinn
Palacios Ruvalcaba, Gustavo
Patel, Jankiben
Patel, Jatin
Patino, Samantha
Perez-Alfaro, Karina
Ponce, Alejandra N.
Poso, Jasmine G.
Ramirez, Gabriel
Ramirez, Hector A.
Resendiz, Nathalie
Reyno, Rachelle
Rodriguez, Diego
Russell, Ian A.
Saenz-Verdugo, Paola
Carmona, Angel S.
Sanchez, Fabian
Sheffer, Sabrina X.
Solorio, Carmen
Soto Trujillo, Alejandra
Vasaya, Geraldine S.
Velasquez Lopez, Victoria
collection PubMed
description Caulacanthus okamurae is an invasive red alga that forms extensive mats in sheltered marine habitats around the world. To determine its genomic structure and genetic relationship to native and other non-native populations of C. okamurae, high-throughput sequencing analysis was performed on an introduced specimen from Bennett Slough, Moss Landing, California, USA. Assembly of 23,146,595 filtered 150 bp paired-end Illumina sequencing reads yielded its complete mitogenome (GenBank accession MT193839) and plastid genome (GenBank accession MT193838). The mitogenome is 25,995 bp in length and contains 50 genes. The plastid genome is 173,516 bp and contains 234 genes. Comparison of the organellar chromosomes to other Gigartinales revealed a high-level of gene synteny. BLAST analysis of marker sequences (rbcL, cox1, cox2) of C. okamurae from Moss Landing identified four identical DNA sequences: one from a specimen from a native population of C. okamurae from South Korea and three from specimens representing invasive populations from France, Spain, and the USA. These genetic results confirm the presence of C. okamurae in central California, USA, and represent the first complete mitogenome and plastid genome from the Caulacanthaceae.
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spelling pubmed-77820712021-01-14 The complete mitochondrial and plastid genomes of the invasive marine red alga Caulacanthus okamurae (Caulacanthaceae, Rhodophyta) from Moss Landing, California, USA Aguilar, Alejandro Ahumada, Tania J. Amezcua Moreno, Noemi Bohn, Jacob Bustamante, Danilo E. Calderon, Martha S. Cardoso, Edgar Carranza, Rocio Castillo, Maria Cazares, Elizabeth Cazares, Emmanuel Companion, Janelle K. Cruz, Jeanette Cuevas, Neovid De La Torre, Lizbeth Dietz, Daniel P. Fernando, Kathleen M. Garcia, Bryan Gomez, Pamela Gonzales-Miramontes, Bianca Hernandez, Yuviana Huaracha, Kayla Hughey, Jeffery R. Lazaro, Gabriela Zhai Lorenzo, Feifei Medrano, Diana Mendoza, Ailen Mendoza, Daniel Mohssin, Adam Orozco Medina, Jeanette Pacheco, Aislinn Palacios Ruvalcaba, Gustavo Patel, Jankiben Patel, Jatin Patino, Samantha Perez-Alfaro, Karina Ponce, Alejandra N. Poso, Jasmine G. Ramirez, Gabriel Ramirez, Hector A. Resendiz, Nathalie Reyno, Rachelle Rodriguez, Diego Russell, Ian A. Saenz-Verdugo, Paola Carmona, Angel S. Sanchez, Fabian Sheffer, Sabrina X. Solorio, Carmen Soto Trujillo, Alejandra Vasaya, Geraldine S. Velasquez Lopez, Victoria Mitochondrial DNA B Resour Mitogenome Announcement Caulacanthus okamurae is an invasive red alga that forms extensive mats in sheltered marine habitats around the world. To determine its genomic structure and genetic relationship to native and other non-native populations of C. okamurae, high-throughput sequencing analysis was performed on an introduced specimen from Bennett Slough, Moss Landing, California, USA. Assembly of 23,146,595 filtered 150 bp paired-end Illumina sequencing reads yielded its complete mitogenome (GenBank accession MT193839) and plastid genome (GenBank accession MT193838). The mitogenome is 25,995 bp in length and contains 50 genes. The plastid genome is 173,516 bp and contains 234 genes. Comparison of the organellar chromosomes to other Gigartinales revealed a high-level of gene synteny. BLAST analysis of marker sequences (rbcL, cox1, cox2) of C. okamurae from Moss Landing identified four identical DNA sequences: one from a specimen from a native population of C. okamurae from South Korea and three from specimens representing invasive populations from France, Spain, and the USA. These genetic results confirm the presence of C. okamurae in central California, USA, and represent the first complete mitogenome and plastid genome from the Caulacanthaceae. Taylor & Francis 2020-05-13 /pmc/articles/PMC7782071/ /pubmed/33457745 http://dx.doi.org/10.1080/23802359.2020.1763870 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Aguilar, Alejandro
Ahumada, Tania J.
Amezcua Moreno, Noemi
Bohn, Jacob
Bustamante, Danilo E.
Calderon, Martha S.
Cardoso, Edgar
Carranza, Rocio
Castillo, Maria
Cazares, Elizabeth
Cazares, Emmanuel
Companion, Janelle K.
Cruz, Jeanette
Cuevas, Neovid
De La Torre, Lizbeth
Dietz, Daniel P.
Fernando, Kathleen M.
Garcia, Bryan
Gomez, Pamela
Gonzales-Miramontes, Bianca
Hernandez, Yuviana
Huaracha, Kayla
Hughey, Jeffery R.
Lazaro, Gabriela
Zhai Lorenzo, Feifei
Medrano, Diana
Mendoza, Ailen
Mendoza, Daniel
Mohssin, Adam
Orozco Medina, Jeanette
Pacheco, Aislinn
Palacios Ruvalcaba, Gustavo
Patel, Jankiben
Patel, Jatin
Patino, Samantha
Perez-Alfaro, Karina
Ponce, Alejandra N.
Poso, Jasmine G.
Ramirez, Gabriel
Ramirez, Hector A.
Resendiz, Nathalie
Reyno, Rachelle
Rodriguez, Diego
Russell, Ian A.
Saenz-Verdugo, Paola
Carmona, Angel S.
Sanchez, Fabian
Sheffer, Sabrina X.
Solorio, Carmen
Soto Trujillo, Alejandra
Vasaya, Geraldine S.
Velasquez Lopez, Victoria
The complete mitochondrial and plastid genomes of the invasive marine red alga Caulacanthus okamurae (Caulacanthaceae, Rhodophyta) from Moss Landing, California, USA
title The complete mitochondrial and plastid genomes of the invasive marine red alga Caulacanthus okamurae (Caulacanthaceae, Rhodophyta) from Moss Landing, California, USA
title_full The complete mitochondrial and plastid genomes of the invasive marine red alga Caulacanthus okamurae (Caulacanthaceae, Rhodophyta) from Moss Landing, California, USA
title_fullStr The complete mitochondrial and plastid genomes of the invasive marine red alga Caulacanthus okamurae (Caulacanthaceae, Rhodophyta) from Moss Landing, California, USA
title_full_unstemmed The complete mitochondrial and plastid genomes of the invasive marine red alga Caulacanthus okamurae (Caulacanthaceae, Rhodophyta) from Moss Landing, California, USA
title_short The complete mitochondrial and plastid genomes of the invasive marine red alga Caulacanthus okamurae (Caulacanthaceae, Rhodophyta) from Moss Landing, California, USA
title_sort complete mitochondrial and plastid genomes of the invasive marine red alga caulacanthus okamurae (caulacanthaceae, rhodophyta) from moss landing, california, usa
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782071/
https://www.ncbi.nlm.nih.gov/pubmed/33457745
http://dx.doi.org/10.1080/23802359.2020.1763870
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AT perezalfarokarina completemitochondrialandplastidgenomesoftheinvasivemarineredalgacaulacanthusokamuraecaulacanthaceaerhodophytafrommosslandingcaliforniausa
AT poncealejandran completemitochondrialandplastidgenomesoftheinvasivemarineredalgacaulacanthusokamuraecaulacanthaceaerhodophytafrommosslandingcaliforniausa
AT posojasmineg completemitochondrialandplastidgenomesoftheinvasivemarineredalgacaulacanthusokamuraecaulacanthaceaerhodophytafrommosslandingcaliforniausa
AT ramirezgabriel completemitochondrialandplastidgenomesoftheinvasivemarineredalgacaulacanthusokamuraecaulacanthaceaerhodophytafrommosslandingcaliforniausa
AT ramirezhectora completemitochondrialandplastidgenomesoftheinvasivemarineredalgacaulacanthusokamuraecaulacanthaceaerhodophytafrommosslandingcaliforniausa
AT resendiznathalie completemitochondrialandplastidgenomesoftheinvasivemarineredalgacaulacanthusokamuraecaulacanthaceaerhodophytafrommosslandingcaliforniausa
AT reynorachelle completemitochondrialandplastidgenomesoftheinvasivemarineredalgacaulacanthusokamuraecaulacanthaceaerhodophytafrommosslandingcaliforniausa
AT rodriguezdiego completemitochondrialandplastidgenomesoftheinvasivemarineredalgacaulacanthusokamuraecaulacanthaceaerhodophytafrommosslandingcaliforniausa
AT russelliana completemitochondrialandplastidgenomesoftheinvasivemarineredalgacaulacanthusokamuraecaulacanthaceaerhodophytafrommosslandingcaliforniausa
AT saenzverdugopaola completemitochondrialandplastidgenomesoftheinvasivemarineredalgacaulacanthusokamuraecaulacanthaceaerhodophytafrommosslandingcaliforniausa
AT carmonaangels completemitochondrialandplastidgenomesoftheinvasivemarineredalgacaulacanthusokamuraecaulacanthaceaerhodophytafrommosslandingcaliforniausa
AT sanchezfabian completemitochondrialandplastidgenomesoftheinvasivemarineredalgacaulacanthusokamuraecaulacanthaceaerhodophytafrommosslandingcaliforniausa
AT sheffersabrinax completemitochondrialandplastidgenomesoftheinvasivemarineredalgacaulacanthusokamuraecaulacanthaceaerhodophytafrommosslandingcaliforniausa
AT soloriocarmen completemitochondrialandplastidgenomesoftheinvasivemarineredalgacaulacanthusokamuraecaulacanthaceaerhodophytafrommosslandingcaliforniausa
AT sototrujilloalejandra completemitochondrialandplastidgenomesoftheinvasivemarineredalgacaulacanthusokamuraecaulacanthaceaerhodophytafrommosslandingcaliforniausa
AT vasayageraldines completemitochondrialandplastidgenomesoftheinvasivemarineredalgacaulacanthusokamuraecaulacanthaceaerhodophytafrommosslandingcaliforniausa
AT velasquezlopezvictoria completemitochondrialandplastidgenomesoftheinvasivemarineredalgacaulacanthusokamuraecaulacanthaceaerhodophytafrommosslandingcaliforniausa