Cargando…

The complete chloroplast genome sequence of Populus wilsonii based on landscape design, and a comparative analysis with other Populus species

In the landscape planning and design, the ecological concept should occupy a dominant position, and the construction of an ‘environmentally friendly, resource-saving’ ecological new city is inseparable from the cultivation of forest tree species. Populus wilsonii, is an important landscape design tr...

Descripción completa

Detalles Bibliográficos
Autor principal: Du, Sen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782094/
https://www.ncbi.nlm.nih.gov/pubmed/33457918
http://dx.doi.org/10.1080/23802359.2020.1787901
_version_ 1783631821827735552
author Du, Sen
author_facet Du, Sen
author_sort Du, Sen
collection PubMed
description In the landscape planning and design, the ecological concept should occupy a dominant position, and the construction of an ‘environmentally friendly, resource-saving’ ecological new city is inseparable from the cultivation of forest tree species. Populus wilsonii, is an important landscape design tree species. Populus wilsonii, is also an important ecological role in boreal and temperate forests, serving as wildlife habitats and watersheds and is an important landscape ornamental tree species. The complete chloroplast genome sequence of Populus wilsonii was characterized from Illumina pair-end sequencing. The chloroplast genome of P. wilsonii was 155,716 bp in length, containing a large single-copy region (LSC) of 85,022 bp, a small single-copy region (SSC) of 16,626 bp, and two inverted repeat (IR) regions of 27,034 bp. The overall GC content is 36.70%, while the correponding values of the LSC, SSC, and IR regions are 34.5%, 30.6%, and 42.0%, respectively. The genome contains 129 complete genes, including 84 protein-coding genes (62 protein-coding gene species), 37 tRNA genes (29 tRNA species) and 8 rRNA genes (4 rRNA species). The Neighbour-joining phylogenetic analysis showed that P. wilsonii and Populus cathayana clustered together as sisters to other Populus species.
format Online
Article
Text
id pubmed-7782094
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77820942021-01-14 The complete chloroplast genome sequence of Populus wilsonii based on landscape design, and a comparative analysis with other Populus species Du, Sen Mitochondrial DNA B Resour Mitogenome Announcement In the landscape planning and design, the ecological concept should occupy a dominant position, and the construction of an ‘environmentally friendly, resource-saving’ ecological new city is inseparable from the cultivation of forest tree species. Populus wilsonii, is an important landscape design tree species. Populus wilsonii, is also an important ecological role in boreal and temperate forests, serving as wildlife habitats and watersheds and is an important landscape ornamental tree species. The complete chloroplast genome sequence of Populus wilsonii was characterized from Illumina pair-end sequencing. The chloroplast genome of P. wilsonii was 155,716 bp in length, containing a large single-copy region (LSC) of 85,022 bp, a small single-copy region (SSC) of 16,626 bp, and two inverted repeat (IR) regions of 27,034 bp. The overall GC content is 36.70%, while the correponding values of the LSC, SSC, and IR regions are 34.5%, 30.6%, and 42.0%, respectively. The genome contains 129 complete genes, including 84 protein-coding genes (62 protein-coding gene species), 37 tRNA genes (29 tRNA species) and 8 rRNA genes (4 rRNA species). The Neighbour-joining phylogenetic analysis showed that P. wilsonii and Populus cathayana clustered together as sisters to other Populus species. Taylor & Francis 2020-07-09 /pmc/articles/PMC7782094/ /pubmed/33457918 http://dx.doi.org/10.1080/23802359.2020.1787901 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Du, Sen
The complete chloroplast genome sequence of Populus wilsonii based on landscape design, and a comparative analysis with other Populus species
title The complete chloroplast genome sequence of Populus wilsonii based on landscape design, and a comparative analysis with other Populus species
title_full The complete chloroplast genome sequence of Populus wilsonii based on landscape design, and a comparative analysis with other Populus species
title_fullStr The complete chloroplast genome sequence of Populus wilsonii based on landscape design, and a comparative analysis with other Populus species
title_full_unstemmed The complete chloroplast genome sequence of Populus wilsonii based on landscape design, and a comparative analysis with other Populus species
title_short The complete chloroplast genome sequence of Populus wilsonii based on landscape design, and a comparative analysis with other Populus species
title_sort complete chloroplast genome sequence of populus wilsonii based on landscape design, and a comparative analysis with other populus species
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782094/
https://www.ncbi.nlm.nih.gov/pubmed/33457918
http://dx.doi.org/10.1080/23802359.2020.1787901
work_keys_str_mv AT dusen thecompletechloroplastgenomesequenceofpopuluswilsoniibasedonlandscapedesignandacomparativeanalysiswithotherpopulusspecies
AT dusen completechloroplastgenomesequenceofpopuluswilsoniibasedonlandscapedesignandacomparativeanalysiswithotherpopulusspecies