The complete chloroplast genome of Spartina alterniflora

Spartina alterniflora (also named as Sporobolus alterniflorus) grows in coastal salt marshes area, which has important economic value in coastal natural wetlands. In the process of this research, the whole chloroplast genome sequence of Spartina alterniflora was recovered by Illumina sequencing. The...

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Autores principales: Zhao, Yang, Wang, Kai, He, Yingying, Wang, Yanfeng, Qu, Changfeng, Miao, Jinlai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782145/
https://www.ncbi.nlm.nih.gov/pubmed/33457819
http://dx.doi.org/10.1080/23802359.2020.1776173
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author Zhao, Yang
Wang, Kai
He, Yingying
Wang, Yanfeng
Qu, Changfeng
Miao, Jinlai
author_facet Zhao, Yang
Wang, Kai
He, Yingying
Wang, Yanfeng
Qu, Changfeng
Miao, Jinlai
author_sort Zhao, Yang
collection PubMed
description Spartina alterniflora (also named as Sporobolus alterniflorus) grows in coastal salt marshes area, which has important economic value in coastal natural wetlands. In the process of this research, the whole chloroplast genome sequence of Spartina alterniflora was recovered by Illumina sequencing. The complete genome was 135,560 bp in length with 38.45% GC content which was a circular genome containing a large single-copy region (LSC, 80,828 bp), a small single-copy region (SSC, 12,714 bp) and a pair of inverted repeat regions (IRs, 42,018 bp). Totally, it encodes 130 genes, including 84 protein-coding genes, 38 tRNAs, and 8 rRNAs. Phylogenetic analysis indicated that Spartina alterniflora was closely related to Sporobolus maritimus.
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spelling pubmed-77821452021-01-14 The complete chloroplast genome of Spartina alterniflora Zhao, Yang Wang, Kai He, Yingying Wang, Yanfeng Qu, Changfeng Miao, Jinlai Mitochondrial DNA B Resour Mitogenome Announcement Spartina alterniflora (also named as Sporobolus alterniflorus) grows in coastal salt marshes area, which has important economic value in coastal natural wetlands. In the process of this research, the whole chloroplast genome sequence of Spartina alterniflora was recovered by Illumina sequencing. The complete genome was 135,560 bp in length with 38.45% GC content which was a circular genome containing a large single-copy region (LSC, 80,828 bp), a small single-copy region (SSC, 12,714 bp) and a pair of inverted repeat regions (IRs, 42,018 bp). Totally, it encodes 130 genes, including 84 protein-coding genes, 38 tRNAs, and 8 rRNAs. Phylogenetic analysis indicated that Spartina alterniflora was closely related to Sporobolus maritimus. Taylor & Francis 2020-06-12 /pmc/articles/PMC7782145/ /pubmed/33457819 http://dx.doi.org/10.1080/23802359.2020.1776173 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhao, Yang
Wang, Kai
He, Yingying
Wang, Yanfeng
Qu, Changfeng
Miao, Jinlai
The complete chloroplast genome of Spartina alterniflora
title The complete chloroplast genome of Spartina alterniflora
title_full The complete chloroplast genome of Spartina alterniflora
title_fullStr The complete chloroplast genome of Spartina alterniflora
title_full_unstemmed The complete chloroplast genome of Spartina alterniflora
title_short The complete chloroplast genome of Spartina alterniflora
title_sort complete chloroplast genome of spartina alterniflora
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782145/
https://www.ncbi.nlm.nih.gov/pubmed/33457819
http://dx.doi.org/10.1080/23802359.2020.1776173
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