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Characterization of the first chloroplast genome of Tabebuia (Bignoniaceae)
The chloroplast genome of Tabebuia nodosa is described and characterized here. This species is endemic to the Chaco and the first species of Tabebuia to have its organelle genome sequenced, providing a genomic resource for phylogenetic inferences. The plastome of T. nodosa is 158,454 bp in length, w...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782154/ https://www.ncbi.nlm.nih.gov/pubmed/33458015 http://dx.doi.org/10.1080/23802359.2020.1791003 |
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author | Fonseca, Luiz Henrique M. Lohmann, Lúcia G. |
author_facet | Fonseca, Luiz Henrique M. Lohmann, Lúcia G. |
author_sort | Fonseca, Luiz Henrique M. |
collection | PubMed |
description | The chloroplast genome of Tabebuia nodosa is described and characterized here. This species is endemic to the Chaco and the first species of Tabebuia to have its organelle genome sequenced, providing a genomic resource for phylogenetic inferences. The plastome of T. nodosa is 158,454 bp in length, with a large single-copy of 85,406 bp, a small single-copy of 12,785 bp, and inverted repeats of 30,116 bp each. It contains 131 genes, with 86 protein-coding genes, 37 tRNA, and 8 rRNA. Overall, the GC content is 38.2%. The T. nodosa plastome resembles the structural organization of plastomes commonly found in flowering plants, including those of other genera of Bignoniaceae. A phylogenetic analysis combining a subset of Bignoniaceae plastomes confirms the placement of T. nodosa within the Tabebuia alliance with maximum support. |
format | Online Article Text |
id | pubmed-7782154 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77821542021-01-14 Characterization of the first chloroplast genome of Tabebuia (Bignoniaceae) Fonseca, Luiz Henrique M. Lohmann, Lúcia G. Mitochondrial DNA B Resour Mitogenome Announcement The chloroplast genome of Tabebuia nodosa is described and characterized here. This species is endemic to the Chaco and the first species of Tabebuia to have its organelle genome sequenced, providing a genomic resource for phylogenetic inferences. The plastome of T. nodosa is 158,454 bp in length, with a large single-copy of 85,406 bp, a small single-copy of 12,785 bp, and inverted repeats of 30,116 bp each. It contains 131 genes, with 86 protein-coding genes, 37 tRNA, and 8 rRNA. Overall, the GC content is 38.2%. The T. nodosa plastome resembles the structural organization of plastomes commonly found in flowering plants, including those of other genera of Bignoniaceae. A phylogenetic analysis combining a subset of Bignoniaceae plastomes confirms the placement of T. nodosa within the Tabebuia alliance with maximum support. Taylor & Francis 2020-07-23 /pmc/articles/PMC7782154/ /pubmed/33458015 http://dx.doi.org/10.1080/23802359.2020.1791003 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Fonseca, Luiz Henrique M. Lohmann, Lúcia G. Characterization of the first chloroplast genome of Tabebuia (Bignoniaceae) |
title | Characterization of the first chloroplast genome of Tabebuia (Bignoniaceae) |
title_full | Characterization of the first chloroplast genome of Tabebuia (Bignoniaceae) |
title_fullStr | Characterization of the first chloroplast genome of Tabebuia (Bignoniaceae) |
title_full_unstemmed | Characterization of the first chloroplast genome of Tabebuia (Bignoniaceae) |
title_short | Characterization of the first chloroplast genome of Tabebuia (Bignoniaceae) |
title_sort | characterization of the first chloroplast genome of tabebuia (bignoniaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782154/ https://www.ncbi.nlm.nih.gov/pubmed/33458015 http://dx.doi.org/10.1080/23802359.2020.1791003 |
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