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Characterization of the first chloroplast genome of Tabebuia (Bignoniaceae)

The chloroplast genome of Tabebuia nodosa is described and characterized here. This species is endemic to the Chaco and the first species of Tabebuia to have its organelle genome sequenced, providing a genomic resource for phylogenetic inferences. The plastome of T. nodosa is 158,454 bp in length, w...

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Autores principales: Fonseca, Luiz Henrique M., Lohmann, Lúcia G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782154/
https://www.ncbi.nlm.nih.gov/pubmed/33458015
http://dx.doi.org/10.1080/23802359.2020.1791003
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author Fonseca, Luiz Henrique M.
Lohmann, Lúcia G.
author_facet Fonseca, Luiz Henrique M.
Lohmann, Lúcia G.
author_sort Fonseca, Luiz Henrique M.
collection PubMed
description The chloroplast genome of Tabebuia nodosa is described and characterized here. This species is endemic to the Chaco and the first species of Tabebuia to have its organelle genome sequenced, providing a genomic resource for phylogenetic inferences. The plastome of T. nodosa is 158,454 bp in length, with a large single-copy of 85,406 bp, a small single-copy of 12,785 bp, and inverted repeats of 30,116 bp each. It contains 131 genes, with 86 protein-coding genes, 37 tRNA, and 8 rRNA. Overall, the GC content is 38.2%. The T. nodosa plastome resembles the structural organization of plastomes commonly found in flowering plants, including those of other genera of Bignoniaceae. A phylogenetic analysis combining a subset of Bignoniaceae plastomes confirms the placement of T. nodosa within the Tabebuia alliance with maximum support.
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spelling pubmed-77821542021-01-14 Characterization of the first chloroplast genome of Tabebuia (Bignoniaceae) Fonseca, Luiz Henrique M. Lohmann, Lúcia G. Mitochondrial DNA B Resour Mitogenome Announcement The chloroplast genome of Tabebuia nodosa is described and characterized here. This species is endemic to the Chaco and the first species of Tabebuia to have its organelle genome sequenced, providing a genomic resource for phylogenetic inferences. The plastome of T. nodosa is 158,454 bp in length, with a large single-copy of 85,406 bp, a small single-copy of 12,785 bp, and inverted repeats of 30,116 bp each. It contains 131 genes, with 86 protein-coding genes, 37 tRNA, and 8 rRNA. Overall, the GC content is 38.2%. The T. nodosa plastome resembles the structural organization of plastomes commonly found in flowering plants, including those of other genera of Bignoniaceae. A phylogenetic analysis combining a subset of Bignoniaceae plastomes confirms the placement of T. nodosa within the Tabebuia alliance with maximum support. Taylor & Francis 2020-07-23 /pmc/articles/PMC7782154/ /pubmed/33458015 http://dx.doi.org/10.1080/23802359.2020.1791003 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Fonseca, Luiz Henrique M.
Lohmann, Lúcia G.
Characterization of the first chloroplast genome of Tabebuia (Bignoniaceae)
title Characterization of the first chloroplast genome of Tabebuia (Bignoniaceae)
title_full Characterization of the first chloroplast genome of Tabebuia (Bignoniaceae)
title_fullStr Characterization of the first chloroplast genome of Tabebuia (Bignoniaceae)
title_full_unstemmed Characterization of the first chloroplast genome of Tabebuia (Bignoniaceae)
title_short Characterization of the first chloroplast genome of Tabebuia (Bignoniaceae)
title_sort characterization of the first chloroplast genome of tabebuia (bignoniaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782154/
https://www.ncbi.nlm.nih.gov/pubmed/33458015
http://dx.doi.org/10.1080/23802359.2020.1791003
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