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Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China
Chimonanthus praecox, a deciduous shrub tree, is endemic to China and widely cultivated in the world as a popular garden and ornamental plant. Here, we have reported its complete chloroplast genome with a length of 153,181 bp, containing a large single copy (LSC) region of 86,916 bp, a small single...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782217/ https://www.ncbi.nlm.nih.gov/pubmed/33458206 http://dx.doi.org/10.1080/23802359.2020.1823277 |
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author | Zhou, Guang-Can Wang, Jie-Yu Li, Wen Zhang, Ming Meng, Guo-Qing Wang, Heng-Yi Chen, Xiao Wu, Yu-Han Wu, Ping Wang, Yi-Lei |
author_facet | Zhou, Guang-Can Wang, Jie-Yu Li, Wen Zhang, Ming Meng, Guo-Qing Wang, Heng-Yi Chen, Xiao Wu, Yu-Han Wu, Ping Wang, Yi-Lei |
author_sort | Zhou, Guang-Can |
collection | PubMed |
description | Chimonanthus praecox, a deciduous shrub tree, is endemic to China and widely cultivated in the world as a popular garden and ornamental plant. Here, we have reported its complete chloroplast genome with a length of 153,181 bp, containing a large single copy (LSC) region of 86,916 bp, a small single copy (SSC) region of 19,767 bp and two identical inverted repeat regions (IRs) of 23,249 bp. The overall GC contents of the plastome were 39.27%. A total of 114 unique genes were successfully annotated consisting of 80 protein-coding genes, 30 tRNA genes and four rRNA genes. Sixteen genes each possessed one intron and three genes had two introns. The ML phylogenetic analysis supports Chimonanthus as sister to Calycanthus. This result will be helpful for genetic breeding and population genetics of C. praecox, DNA barcoding of Chimonanthus, and phylogenetic studies of Calycanthaceae. |
format | Online Article Text |
id | pubmed-7782217 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77822172021-01-14 Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China Zhou, Guang-Can Wang, Jie-Yu Li, Wen Zhang, Ming Meng, Guo-Qing Wang, Heng-Yi Chen, Xiao Wu, Yu-Han Wu, Ping Wang, Yi-Lei Mitochondrial DNA B Resour Mitogenome Announcement Chimonanthus praecox, a deciduous shrub tree, is endemic to China and widely cultivated in the world as a popular garden and ornamental plant. Here, we have reported its complete chloroplast genome with a length of 153,181 bp, containing a large single copy (LSC) region of 86,916 bp, a small single copy (SSC) region of 19,767 bp and two identical inverted repeat regions (IRs) of 23,249 bp. The overall GC contents of the plastome were 39.27%. A total of 114 unique genes were successfully annotated consisting of 80 protein-coding genes, 30 tRNA genes and four rRNA genes. Sixteen genes each possessed one intron and three genes had two introns. The ML phylogenetic analysis supports Chimonanthus as sister to Calycanthus. This result will be helpful for genetic breeding and population genetics of C. praecox, DNA barcoding of Chimonanthus, and phylogenetic studies of Calycanthaceae. Taylor & Francis 2020-10-05 /pmc/articles/PMC7782217/ /pubmed/33458206 http://dx.doi.org/10.1080/23802359.2020.1823277 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zhou, Guang-Can Wang, Jie-Yu Li, Wen Zhang, Ming Meng, Guo-Qing Wang, Heng-Yi Chen, Xiao Wu, Yu-Han Wu, Ping Wang, Yi-Lei Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China |
title | Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China |
title_full | Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China |
title_fullStr | Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China |
title_full_unstemmed | Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China |
title_short | Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China |
title_sort | complete chloroplast genome sequence of chimonanthus praecox link (calycanthaceae): an endemic plant species in china |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782217/ https://www.ncbi.nlm.nih.gov/pubmed/33458206 http://dx.doi.org/10.1080/23802359.2020.1823277 |
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