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Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China

Chimonanthus praecox, a deciduous shrub tree, is endemic to China and widely cultivated in the world as a popular garden and ornamental plant. Here, we have reported its complete chloroplast genome with a length of 153,181 bp, containing a large single copy (LSC) region of 86,916 bp, a small single...

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Autores principales: Zhou, Guang-Can, Wang, Jie-Yu, Li, Wen, Zhang, Ming, Meng, Guo-Qing, Wang, Heng-Yi, Chen, Xiao, Wu, Yu-Han, Wu, Ping, Wang, Yi-Lei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782217/
https://www.ncbi.nlm.nih.gov/pubmed/33458206
http://dx.doi.org/10.1080/23802359.2020.1823277
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author Zhou, Guang-Can
Wang, Jie-Yu
Li, Wen
Zhang, Ming
Meng, Guo-Qing
Wang, Heng-Yi
Chen, Xiao
Wu, Yu-Han
Wu, Ping
Wang, Yi-Lei
author_facet Zhou, Guang-Can
Wang, Jie-Yu
Li, Wen
Zhang, Ming
Meng, Guo-Qing
Wang, Heng-Yi
Chen, Xiao
Wu, Yu-Han
Wu, Ping
Wang, Yi-Lei
author_sort Zhou, Guang-Can
collection PubMed
description Chimonanthus praecox, a deciduous shrub tree, is endemic to China and widely cultivated in the world as a popular garden and ornamental plant. Here, we have reported its complete chloroplast genome with a length of 153,181 bp, containing a large single copy (LSC) region of 86,916 bp, a small single copy (SSC) region of 19,767 bp and two identical inverted repeat regions (IRs) of 23,249 bp. The overall GC contents of the plastome were 39.27%. A total of 114 unique genes were successfully annotated consisting of 80 protein-coding genes, 30 tRNA genes and four rRNA genes. Sixteen genes each possessed one intron and three genes had two introns. The ML phylogenetic analysis supports Chimonanthus as sister to Calycanthus. This result will be helpful for genetic breeding and population genetics of C. praecox, DNA barcoding of Chimonanthus, and phylogenetic studies of Calycanthaceae.
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spelling pubmed-77822172021-01-14 Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China Zhou, Guang-Can Wang, Jie-Yu Li, Wen Zhang, Ming Meng, Guo-Qing Wang, Heng-Yi Chen, Xiao Wu, Yu-Han Wu, Ping Wang, Yi-Lei Mitochondrial DNA B Resour Mitogenome Announcement Chimonanthus praecox, a deciduous shrub tree, is endemic to China and widely cultivated in the world as a popular garden and ornamental plant. Here, we have reported its complete chloroplast genome with a length of 153,181 bp, containing a large single copy (LSC) region of 86,916 bp, a small single copy (SSC) region of 19,767 bp and two identical inverted repeat regions (IRs) of 23,249 bp. The overall GC contents of the plastome were 39.27%. A total of 114 unique genes were successfully annotated consisting of 80 protein-coding genes, 30 tRNA genes and four rRNA genes. Sixteen genes each possessed one intron and three genes had two introns. The ML phylogenetic analysis supports Chimonanthus as sister to Calycanthus. This result will be helpful for genetic breeding and population genetics of C. praecox, DNA barcoding of Chimonanthus, and phylogenetic studies of Calycanthaceae. Taylor & Francis 2020-10-05 /pmc/articles/PMC7782217/ /pubmed/33458206 http://dx.doi.org/10.1080/23802359.2020.1823277 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhou, Guang-Can
Wang, Jie-Yu
Li, Wen
Zhang, Ming
Meng, Guo-Qing
Wang, Heng-Yi
Chen, Xiao
Wu, Yu-Han
Wu, Ping
Wang, Yi-Lei
Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China
title Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China
title_full Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China
title_fullStr Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China
title_full_unstemmed Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China
title_short Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China
title_sort complete chloroplast genome sequence of chimonanthus praecox link (calycanthaceae): an endemic plant species in china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782217/
https://www.ncbi.nlm.nih.gov/pubmed/33458206
http://dx.doi.org/10.1080/23802359.2020.1823277
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