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Comparison of eight complete plastid genomes from three moss families Amblystegiaceae, Calliergonaceae and Pylaisiaceae

We sequenced and assembled eight complete plastid genomes from three closely related pleurocarpous moss families: Amblystegium serpens, Campyliadelphus stellatus, Cratoneuron filicinum, Drepanocladus aduncus, and Leptodictyum humile (Amblystegiaceae), Calliergon sarmentosum and Warnstorfia exannulat...

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Autores principales: Sheng, Wei, Yue, Xin-Rui, Li, Na, Liu, Yang, Wu, Yu-Huan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782263/
https://www.ncbi.nlm.nih.gov/pubmed/33458070
http://dx.doi.org/10.1080/23802359.2020.1797548
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author Sheng, Wei
Yue, Xin-Rui
Li, Na
Liu, Yang
Wu, Yu-Huan
author_facet Sheng, Wei
Yue, Xin-Rui
Li, Na
Liu, Yang
Wu, Yu-Huan
author_sort Sheng, Wei
collection PubMed
description We sequenced and assembled eight complete plastid genomes from three closely related pleurocarpous moss families: Amblystegium serpens, Campyliadelphus stellatus, Cratoneuron filicinum, Drepanocladus aduncus, and Leptodictyum humile (Amblystegiaceae), Calliergon sarmentosum and Warnstorfia exannulata (Calliergonaceae), and Calliergonella cuspidata (Pylaisiaceae). The newly generated plastid genomes range from 124,256 to 124,819 bp, with two inverted repeat regions (9,624–9,696 bp) separated by a large single-copy region (86,422–86,924 bp) and a small single-copy region (18,430–18,514 bp). All these plastid genomes encode 116 unique genes including 82 protein-coding genes, 30 tRNA genes and four rRNAgenes. The overall GC content is between 28.6%–29.3%. Phylogenetic analysis showed that all Amblystegiaceae species Amblystegium serpens, Campyliadelphus stellatus, Cratoneuron filicinum, Drepanocladus aduncus, Leptodictyum humile, and Sanionia uncinata clustered in one clade, which is sister to the Pylaisiaceae species Calliergonella cuspidata. The two Calliergonaceae species Calliergon sarmentosum and Warnstorfia exannulata form a clade and is sister to Amblystegiaceae and Pylaisiaceae.
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spelling pubmed-77822632021-01-14 Comparison of eight complete plastid genomes from three moss families Amblystegiaceae, Calliergonaceae and Pylaisiaceae Sheng, Wei Yue, Xin-Rui Li, Na Liu, Yang Wu, Yu-Huan Mitochondrial DNA B Resour Mitogenome Announcement We sequenced and assembled eight complete plastid genomes from three closely related pleurocarpous moss families: Amblystegium serpens, Campyliadelphus stellatus, Cratoneuron filicinum, Drepanocladus aduncus, and Leptodictyum humile (Amblystegiaceae), Calliergon sarmentosum and Warnstorfia exannulata (Calliergonaceae), and Calliergonella cuspidata (Pylaisiaceae). The newly generated plastid genomes range from 124,256 to 124,819 bp, with two inverted repeat regions (9,624–9,696 bp) separated by a large single-copy region (86,422–86,924 bp) and a small single-copy region (18,430–18,514 bp). All these plastid genomes encode 116 unique genes including 82 protein-coding genes, 30 tRNA genes and four rRNAgenes. The overall GC content is between 28.6%–29.3%. Phylogenetic analysis showed that all Amblystegiaceae species Amblystegium serpens, Campyliadelphus stellatus, Cratoneuron filicinum, Drepanocladus aduncus, Leptodictyum humile, and Sanionia uncinata clustered in one clade, which is sister to the Pylaisiaceae species Calliergonella cuspidata. The two Calliergonaceae species Calliergon sarmentosum and Warnstorfia exannulata form a clade and is sister to Amblystegiaceae and Pylaisiaceae. Taylor & Francis 2020-07-30 /pmc/articles/PMC7782263/ /pubmed/33458070 http://dx.doi.org/10.1080/23802359.2020.1797548 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Sheng, Wei
Yue, Xin-Rui
Li, Na
Liu, Yang
Wu, Yu-Huan
Comparison of eight complete plastid genomes from three moss families Amblystegiaceae, Calliergonaceae and Pylaisiaceae
title Comparison of eight complete plastid genomes from three moss families Amblystegiaceae, Calliergonaceae and Pylaisiaceae
title_full Comparison of eight complete plastid genomes from three moss families Amblystegiaceae, Calliergonaceae and Pylaisiaceae
title_fullStr Comparison of eight complete plastid genomes from three moss families Amblystegiaceae, Calliergonaceae and Pylaisiaceae
title_full_unstemmed Comparison of eight complete plastid genomes from three moss families Amblystegiaceae, Calliergonaceae and Pylaisiaceae
title_short Comparison of eight complete plastid genomes from three moss families Amblystegiaceae, Calliergonaceae and Pylaisiaceae
title_sort comparison of eight complete plastid genomes from three moss families amblystegiaceae, calliergonaceae and pylaisiaceae
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782263/
https://www.ncbi.nlm.nih.gov/pubmed/33458070
http://dx.doi.org/10.1080/23802359.2020.1797548
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