The complete chloroplast genome of Fraxinus hupehensis and phylogenic analysis of Lamiales

Fraxinus hupehensis is a national rare and Endangered tree in the Oleaceae family, that has high commercial value owing to its slow growth, interlaced roots, intricate tree shape, and easy to shape. Here, we determined the complete chloroplast (cp) genome sequence for F. hupehensis using genome skim...

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Detalles Bibliográficos
Autores principales: Zhang, Weirui, Liu, Peng, Liu, Jiahui, He, Yanxia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782264/
https://www.ncbi.nlm.nih.gov/pubmed/33458241
http://dx.doi.org/10.1080/23802359.2020.1829128
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author Zhang, Weirui
Liu, Peng
Liu, Jiahui
He, Yanxia
author_facet Zhang, Weirui
Liu, Peng
Liu, Jiahui
He, Yanxia
author_sort Zhang, Weirui
collection PubMed
description Fraxinus hupehensis is a national rare and Endangered tree in the Oleaceae family, that has high commercial value owing to its slow growth, interlaced roots, intricate tree shape, and easy to shape. Here, we determined the complete chloroplast (cp) genome sequence for F. hupehensis using genome skimming sequencing. The cp genome was 155,698 bp and consisted of a large single copy (LSC) region (86,498 bp), a small single copy (SSC) region (17,803 bp) and two inverted repeats (IRs) (25,694 bp). It encodes 131 genes, including 88 protein-coding genes, 8 rRNAs and 35 tRNAs. Phylogenetic analysis indicates that F. hupehensis was relatively closely related to F. chinensis compared to other species in the Oleaceae family.
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spelling pubmed-77822642021-01-14 The complete chloroplast genome of Fraxinus hupehensis and phylogenic analysis of Lamiales Zhang, Weirui Liu, Peng Liu, Jiahui He, Yanxia Mitochondrial DNA B Resour Mitogenome Announcement Fraxinus hupehensis is a national rare and Endangered tree in the Oleaceae family, that has high commercial value owing to its slow growth, interlaced roots, intricate tree shape, and easy to shape. Here, we determined the complete chloroplast (cp) genome sequence for F. hupehensis using genome skimming sequencing. The cp genome was 155,698 bp and consisted of a large single copy (LSC) region (86,498 bp), a small single copy (SSC) region (17,803 bp) and two inverted repeats (IRs) (25,694 bp). It encodes 131 genes, including 88 protein-coding genes, 8 rRNAs and 35 tRNAs. Phylogenetic analysis indicates that F. hupehensis was relatively closely related to F. chinensis compared to other species in the Oleaceae family. Taylor & Francis 2020-10-12 /pmc/articles/PMC7782264/ /pubmed/33458241 http://dx.doi.org/10.1080/23802359.2020.1829128 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhang, Weirui
Liu, Peng
Liu, Jiahui
He, Yanxia
The complete chloroplast genome of Fraxinus hupehensis and phylogenic analysis of Lamiales
title The complete chloroplast genome of Fraxinus hupehensis and phylogenic analysis of Lamiales
title_full The complete chloroplast genome of Fraxinus hupehensis and phylogenic analysis of Lamiales
title_fullStr The complete chloroplast genome of Fraxinus hupehensis and phylogenic analysis of Lamiales
title_full_unstemmed The complete chloroplast genome of Fraxinus hupehensis and phylogenic analysis of Lamiales
title_short The complete chloroplast genome of Fraxinus hupehensis and phylogenic analysis of Lamiales
title_sort complete chloroplast genome of fraxinus hupehensis and phylogenic analysis of lamiales
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782264/
https://www.ncbi.nlm.nih.gov/pubmed/33458241
http://dx.doi.org/10.1080/23802359.2020.1829128
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