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The complete chloroplast genome of Rhamnus globosa (Rhamnaceae)
Rhamnus globosa Bunge is a small shrub that can be used in the treatment of swollen poison, because of the antimicrobial activity. Here, we constructed the complete chloroplast genome of the R. globosa using Illumina sequencing technology. The circular cp genome was 160,642 bp in size, and comprises...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782265/ https://www.ncbi.nlm.nih.gov/pubmed/33457966 http://dx.doi.org/10.1080/23802359.2020.1791010 |
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author | Xie, Yanping Wang, Ze Jiang, Xianfeng Zhang, Xingwang |
author_facet | Xie, Yanping Wang, Ze Jiang, Xianfeng Zhang, Xingwang |
author_sort | Xie, Yanping |
collection | PubMed |
description | Rhamnus globosa Bunge is a small shrub that can be used in the treatment of swollen poison, because of the antimicrobial activity. Here, we constructed the complete chloroplast genome of the R. globosa using Illumina sequencing technology. The circular cp genome was 160,642 bp in size, and comprises a large single-copy (LSC) region of 88,889 bp, a small single-copy (SSC) region of 18,897 bp, and a pair of inverted repeats (IR) of 26,428 bp. The GC content was 37.14% overall, with 35.01%, 31.42%, and 42.75% for the LSC, SSC, and IR regions, respectively. The plastome comprised 129 unique genes including 81 protein-coding genes, 30 tRNAs, and 4 rRNAs. The ML phylogenetic analysis based on 44 chloroplast genomes in Rosales showed a strong sister relationship with Berchemia species. |
format | Online Article Text |
id | pubmed-7782265 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77822652021-01-14 The complete chloroplast genome of Rhamnus globosa (Rhamnaceae) Xie, Yanping Wang, Ze Jiang, Xianfeng Zhang, Xingwang Mitochondrial DNA B Resour Mitogenome Announcement Rhamnus globosa Bunge is a small shrub that can be used in the treatment of swollen poison, because of the antimicrobial activity. Here, we constructed the complete chloroplast genome of the R. globosa using Illumina sequencing technology. The circular cp genome was 160,642 bp in size, and comprises a large single-copy (LSC) region of 88,889 bp, a small single-copy (SSC) region of 18,897 bp, and a pair of inverted repeats (IR) of 26,428 bp. The GC content was 37.14% overall, with 35.01%, 31.42%, and 42.75% for the LSC, SSC, and IR regions, respectively. The plastome comprised 129 unique genes including 81 protein-coding genes, 30 tRNAs, and 4 rRNAs. The ML phylogenetic analysis based on 44 chloroplast genomes in Rosales showed a strong sister relationship with Berchemia species. Taylor & Francis 2020-07-15 /pmc/articles/PMC7782265/ /pubmed/33457966 http://dx.doi.org/10.1080/23802359.2020.1791010 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Xie, Yanping Wang, Ze Jiang, Xianfeng Zhang, Xingwang The complete chloroplast genome of Rhamnus globosa (Rhamnaceae) |
title | The complete chloroplast genome of Rhamnus globosa (Rhamnaceae) |
title_full | The complete chloroplast genome of Rhamnus globosa (Rhamnaceae) |
title_fullStr | The complete chloroplast genome of Rhamnus globosa (Rhamnaceae) |
title_full_unstemmed | The complete chloroplast genome of Rhamnus globosa (Rhamnaceae) |
title_short | The complete chloroplast genome of Rhamnus globosa (Rhamnaceae) |
title_sort | complete chloroplast genome of rhamnus globosa (rhamnaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782265/ https://www.ncbi.nlm.nih.gov/pubmed/33457966 http://dx.doi.org/10.1080/23802359.2020.1791010 |
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