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The complete chloroplast genome of Rhamnus globosa (Rhamnaceae)

Rhamnus globosa Bunge is a small shrub that can be used in the treatment of swollen poison, because of the antimicrobial activity. Here, we constructed the complete chloroplast genome of the R. globosa using Illumina sequencing technology. The circular cp genome was 160,642 bp in size, and comprises...

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Detalles Bibliográficos
Autores principales: Xie, Yanping, Wang, Ze, Jiang, Xianfeng, Zhang, Xingwang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782265/
https://www.ncbi.nlm.nih.gov/pubmed/33457966
http://dx.doi.org/10.1080/23802359.2020.1791010
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author Xie, Yanping
Wang, Ze
Jiang, Xianfeng
Zhang, Xingwang
author_facet Xie, Yanping
Wang, Ze
Jiang, Xianfeng
Zhang, Xingwang
author_sort Xie, Yanping
collection PubMed
description Rhamnus globosa Bunge is a small shrub that can be used in the treatment of swollen poison, because of the antimicrobial activity. Here, we constructed the complete chloroplast genome of the R. globosa using Illumina sequencing technology. The circular cp genome was 160,642 bp in size, and comprises a large single-copy (LSC) region of 88,889 bp, a small single-copy (SSC) region of 18,897 bp, and a pair of inverted repeats (IR) of 26,428 bp. The GC content was 37.14% overall, with 35.01%, 31.42%, and 42.75% for the LSC, SSC, and IR regions, respectively. The plastome comprised 129 unique genes including 81 protein-coding genes, 30 tRNAs, and 4 rRNAs. The ML phylogenetic analysis based on 44 chloroplast genomes in Rosales showed a strong sister relationship with Berchemia species.
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spelling pubmed-77822652021-01-14 The complete chloroplast genome of Rhamnus globosa (Rhamnaceae) Xie, Yanping Wang, Ze Jiang, Xianfeng Zhang, Xingwang Mitochondrial DNA B Resour Mitogenome Announcement Rhamnus globosa Bunge is a small shrub that can be used in the treatment of swollen poison, because of the antimicrobial activity. Here, we constructed the complete chloroplast genome of the R. globosa using Illumina sequencing technology. The circular cp genome was 160,642 bp in size, and comprises a large single-copy (LSC) region of 88,889 bp, a small single-copy (SSC) region of 18,897 bp, and a pair of inverted repeats (IR) of 26,428 bp. The GC content was 37.14% overall, with 35.01%, 31.42%, and 42.75% for the LSC, SSC, and IR regions, respectively. The plastome comprised 129 unique genes including 81 protein-coding genes, 30 tRNAs, and 4 rRNAs. The ML phylogenetic analysis based on 44 chloroplast genomes in Rosales showed a strong sister relationship with Berchemia species. Taylor & Francis 2020-07-15 /pmc/articles/PMC7782265/ /pubmed/33457966 http://dx.doi.org/10.1080/23802359.2020.1791010 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Xie, Yanping
Wang, Ze
Jiang, Xianfeng
Zhang, Xingwang
The complete chloroplast genome of Rhamnus globosa (Rhamnaceae)
title The complete chloroplast genome of Rhamnus globosa (Rhamnaceae)
title_full The complete chloroplast genome of Rhamnus globosa (Rhamnaceae)
title_fullStr The complete chloroplast genome of Rhamnus globosa (Rhamnaceae)
title_full_unstemmed The complete chloroplast genome of Rhamnus globosa (Rhamnaceae)
title_short The complete chloroplast genome of Rhamnus globosa (Rhamnaceae)
title_sort complete chloroplast genome of rhamnus globosa (rhamnaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782265/
https://www.ncbi.nlm.nih.gov/pubmed/33457966
http://dx.doi.org/10.1080/23802359.2020.1791010
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