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The complete chloroplast genome of Atractylodes macrocephala Koidz. (Asteraceae)
Atractylodes macrocephala Koidz. is a traditional medicinal plant, distributing in China, Korea, and Japan. Here, we assembled and characterized the complete chloroplast (cp) genome of A. macrocephala using Illumina sequencing data. The plastome is 153,256 bp in length, consisting of a pair of inver...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782296/ https://www.ncbi.nlm.nih.gov/pubmed/33457742 http://dx.doi.org/10.1080/23802359.2020.1763867 |
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author | Li, Honghui Yang, Guo |
author_facet | Li, Honghui Yang, Guo |
author_sort | Li, Honghui |
collection | PubMed |
description | Atractylodes macrocephala Koidz. is a traditional medicinal plant, distributing in China, Korea, and Japan. Here, we assembled and characterized the complete chloroplast (cp) genome of A. macrocephala using Illumina sequencing data. The plastome is 153,256 bp in length, consisting of a pair of inverted repeats (IRs) of 25,146 bp, separated by a large single-copy (LSC) region of 84,290 bp and small single-copy (SSC) region of 18,674 bp. A total of 125 genes were identified from the genome, including 88 protein-coding genes, 29 tRNA genes, and eight rRNA genes. The overall GC content of the genome is 37.7%. The phylogenetic analysis based on 42 complete cp sequences revealed that A. macrocephala is closely related to A. chinensis and A. lancea. |
format | Online Article Text |
id | pubmed-7782296 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77822962021-01-14 The complete chloroplast genome of Atractylodes macrocephala Koidz. (Asteraceae) Li, Honghui Yang, Guo Mitochondrial DNA B Resour Mitogenome Announcement Atractylodes macrocephala Koidz. is a traditional medicinal plant, distributing in China, Korea, and Japan. Here, we assembled and characterized the complete chloroplast (cp) genome of A. macrocephala using Illumina sequencing data. The plastome is 153,256 bp in length, consisting of a pair of inverted repeats (IRs) of 25,146 bp, separated by a large single-copy (LSC) region of 84,290 bp and small single-copy (SSC) region of 18,674 bp. A total of 125 genes were identified from the genome, including 88 protein-coding genes, 29 tRNA genes, and eight rRNA genes. The overall GC content of the genome is 37.7%. The phylogenetic analysis based on 42 complete cp sequences revealed that A. macrocephala is closely related to A. chinensis and A. lancea. Taylor & Francis 2020-05-13 /pmc/articles/PMC7782296/ /pubmed/33457742 http://dx.doi.org/10.1080/23802359.2020.1763867 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Li, Honghui Yang, Guo The complete chloroplast genome of Atractylodes macrocephala Koidz. (Asteraceae) |
title | The complete chloroplast genome of Atractylodes macrocephala Koidz. (Asteraceae) |
title_full | The complete chloroplast genome of Atractylodes macrocephala Koidz. (Asteraceae) |
title_fullStr | The complete chloroplast genome of Atractylodes macrocephala Koidz. (Asteraceae) |
title_full_unstemmed | The complete chloroplast genome of Atractylodes macrocephala Koidz. (Asteraceae) |
title_short | The complete chloroplast genome of Atractylodes macrocephala Koidz. (Asteraceae) |
title_sort | complete chloroplast genome of atractylodes macrocephala koidz. (asteraceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782296/ https://www.ncbi.nlm.nih.gov/pubmed/33457742 http://dx.doi.org/10.1080/23802359.2020.1763867 |
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