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The complete chloroplast genome of Atractylodes macrocephala Koidz. (Asteraceae)

Atractylodes macrocephala Koidz. is a traditional medicinal plant, distributing in China, Korea, and Japan. Here, we assembled and characterized the complete chloroplast (cp) genome of A. macrocephala using Illumina sequencing data. The plastome is 153,256 bp in length, consisting of a pair of inver...

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Autores principales: Li, Honghui, Yang, Guo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782296/
https://www.ncbi.nlm.nih.gov/pubmed/33457742
http://dx.doi.org/10.1080/23802359.2020.1763867
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author Li, Honghui
Yang, Guo
author_facet Li, Honghui
Yang, Guo
author_sort Li, Honghui
collection PubMed
description Atractylodes macrocephala Koidz. is a traditional medicinal plant, distributing in China, Korea, and Japan. Here, we assembled and characterized the complete chloroplast (cp) genome of A. macrocephala using Illumina sequencing data. The plastome is 153,256 bp in length, consisting of a pair of inverted repeats (IRs) of 25,146 bp, separated by a large single-copy (LSC) region of 84,290 bp and small single-copy (SSC) region of 18,674 bp. A total of 125 genes were identified from the genome, including 88 protein-coding genes, 29 tRNA genes, and eight rRNA genes. The overall GC content of the genome is 37.7%. The phylogenetic analysis based on 42 complete cp sequences revealed that A. macrocephala is closely related to A. chinensis and A. lancea.
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spelling pubmed-77822962021-01-14 The complete chloroplast genome of Atractylodes macrocephala Koidz. (Asteraceae) Li, Honghui Yang, Guo Mitochondrial DNA B Resour Mitogenome Announcement Atractylodes macrocephala Koidz. is a traditional medicinal plant, distributing in China, Korea, and Japan. Here, we assembled and characterized the complete chloroplast (cp) genome of A. macrocephala using Illumina sequencing data. The plastome is 153,256 bp in length, consisting of a pair of inverted repeats (IRs) of 25,146 bp, separated by a large single-copy (LSC) region of 84,290 bp and small single-copy (SSC) region of 18,674 bp. A total of 125 genes were identified from the genome, including 88 protein-coding genes, 29 tRNA genes, and eight rRNA genes. The overall GC content of the genome is 37.7%. The phylogenetic analysis based on 42 complete cp sequences revealed that A. macrocephala is closely related to A. chinensis and A. lancea. Taylor & Francis 2020-05-13 /pmc/articles/PMC7782296/ /pubmed/33457742 http://dx.doi.org/10.1080/23802359.2020.1763867 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Li, Honghui
Yang, Guo
The complete chloroplast genome of Atractylodes macrocephala Koidz. (Asteraceae)
title The complete chloroplast genome of Atractylodes macrocephala Koidz. (Asteraceae)
title_full The complete chloroplast genome of Atractylodes macrocephala Koidz. (Asteraceae)
title_fullStr The complete chloroplast genome of Atractylodes macrocephala Koidz. (Asteraceae)
title_full_unstemmed The complete chloroplast genome of Atractylodes macrocephala Koidz. (Asteraceae)
title_short The complete chloroplast genome of Atractylodes macrocephala Koidz. (Asteraceae)
title_sort complete chloroplast genome of atractylodes macrocephala koidz. (asteraceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782296/
https://www.ncbi.nlm.nih.gov/pubmed/33457742
http://dx.doi.org/10.1080/23802359.2020.1763867
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