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The complete chloroplast genome sequence of medicinal plant, Selaginella involvens
Selaginella involvens distributed in East Asia region including China used as traditional medicine, which is an important medicinal plant for preventing and treating asthma. The complete chloroplast genome sequence of S. involvens was characterized from Illumina pair-end sequencing. The chloroplast...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782301/ https://www.ncbi.nlm.nih.gov/pubmed/33457877 http://dx.doi.org/10.1080/23802359.2020.1781574 |
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author | Qiu, Dangying Wen, Yangmin Xie, Yonghua Lin, Qingfan |
author_facet | Qiu, Dangying Wen, Yangmin Xie, Yonghua Lin, Qingfan |
author_sort | Qiu, Dangying |
collection | PubMed |
description | Selaginella involvens distributed in East Asia region including China used as traditional medicine, which is an important medicinal plant for preventing and treating asthma. The complete chloroplast genome sequence of S. involvens was characterized from Illumina pair-end sequencing. The chloroplast genome of S. involvens was 126,340 bp in length, containing a large single-copy region (LSC) of 53,214 bp, a small single-copy region (SSC) of 47,561 bp, and two inverted repeat (IR) regions of 12,796 bp. The overall GC content is 38.70%, whereas the corresponding values of the LSC, SSC, and IR regions are 36.2%, 31.9%, and 43.2%, respectively. The genome contains 80 complete genes, including 61 protein-coding genes (45 protein-coding gene species), nine tRNA genes (six tRNA species), and eight rRNA genes (four rRNA species). The Neighbour-joining phylogenetic analysis showed that S. involvens and Selaginella tamariscina clustered together as sisters to other Salvia species. |
format | Online Article Text |
id | pubmed-7782301 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77823012021-01-14 The complete chloroplast genome sequence of medicinal plant, Selaginella involvens Qiu, Dangying Wen, Yangmin Xie, Yonghua Lin, Qingfan Mitochondrial DNA B Resour MitoGenome Announcement Selaginella involvens distributed in East Asia region including China used as traditional medicine, which is an important medicinal plant for preventing and treating asthma. The complete chloroplast genome sequence of S. involvens was characterized from Illumina pair-end sequencing. The chloroplast genome of S. involvens was 126,340 bp in length, containing a large single-copy region (LSC) of 53,214 bp, a small single-copy region (SSC) of 47,561 bp, and two inverted repeat (IR) regions of 12,796 bp. The overall GC content is 38.70%, whereas the corresponding values of the LSC, SSC, and IR regions are 36.2%, 31.9%, and 43.2%, respectively. The genome contains 80 complete genes, including 61 protein-coding genes (45 protein-coding gene species), nine tRNA genes (six tRNA species), and eight rRNA genes (four rRNA species). The Neighbour-joining phylogenetic analysis showed that S. involvens and Selaginella tamariscina clustered together as sisters to other Salvia species. Taylor & Francis 2020-06-26 /pmc/articles/PMC7782301/ /pubmed/33457877 http://dx.doi.org/10.1080/23802359.2020.1781574 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | MitoGenome Announcement Qiu, Dangying Wen, Yangmin Xie, Yonghua Lin, Qingfan The complete chloroplast genome sequence of medicinal plant, Selaginella involvens |
title | The complete chloroplast genome sequence of medicinal plant, Selaginella involvens |
title_full | The complete chloroplast genome sequence of medicinal plant, Selaginella involvens |
title_fullStr | The complete chloroplast genome sequence of medicinal plant, Selaginella involvens |
title_full_unstemmed | The complete chloroplast genome sequence of medicinal plant, Selaginella involvens |
title_short | The complete chloroplast genome sequence of medicinal plant, Selaginella involvens |
title_sort | complete chloroplast genome sequence of medicinal plant, selaginella involvens |
topic | MitoGenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782301/ https://www.ncbi.nlm.nih.gov/pubmed/33457877 http://dx.doi.org/10.1080/23802359.2020.1781574 |
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