The complete chloroplast genome sequence of Populus trinervis, and a comparative analysis with other Populus species

Populus trinervis, which is a unique plant for China. The complete chloroplast genome sequence of Populus trinervis was characterized from Illumina pair-end sequencing. The chloroplast genome of P. trinervis was 156,415 bp in length, containing a large single-copy region (LSC) of 84,805 bp, a small...

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Autores principales: Liu, Xia, Sun, Chong, Chen, Zheng, Gong, Xia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782331/
https://www.ncbi.nlm.nih.gov/pubmed/33457829
http://dx.doi.org/10.1080/23802359.2020.1775525
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author Liu, Xia
Sun, Chong
Chen, Zheng
Gong, Xia
author_facet Liu, Xia
Sun, Chong
Chen, Zheng
Gong, Xia
author_sort Liu, Xia
collection PubMed
description Populus trinervis, which is a unique plant for China. The complete chloroplast genome sequence of Populus trinervis was characterized from Illumina pair-end sequencing. The chloroplast genome of P. trinervis was 156,415 bp in length, containing a large single-copy region (LSC) of 84,805 bp, a small single-copy region (SSC) of 16,505 bp, and two inverted repeat (IR) regions of 27,554 bp. The overall GC content is 36.70%, while the corresponding values of the LSC, SSC, and IR regions are 34.5, 30.5, and 42.0%, respectively. The genome contains 131 complete genes, including 86 protein-coding genes (62 protein-coding gene species), 37 tRNA genes (29 tRNA species), and 8 rRNA genes (4 rRNA species). The Neighbour-joining phylogenetic analysis showed that P. trinervis and P. hopeiensis clustered together as sisters to other Populus species.
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spelling pubmed-77823312021-01-14 The complete chloroplast genome sequence of Populus trinervis, and a comparative analysis with other Populus species Liu, Xia Sun, Chong Chen, Zheng Gong, Xia Mitochondrial DNA B Resour Mitogenome Announcement Populus trinervis, which is a unique plant for China. The complete chloroplast genome sequence of Populus trinervis was characterized from Illumina pair-end sequencing. The chloroplast genome of P. trinervis was 156,415 bp in length, containing a large single-copy region (LSC) of 84,805 bp, a small single-copy region (SSC) of 16,505 bp, and two inverted repeat (IR) regions of 27,554 bp. The overall GC content is 36.70%, while the corresponding values of the LSC, SSC, and IR regions are 34.5, 30.5, and 42.0%, respectively. The genome contains 131 complete genes, including 86 protein-coding genes (62 protein-coding gene species), 37 tRNA genes (29 tRNA species), and 8 rRNA genes (4 rRNA species). The Neighbour-joining phylogenetic analysis showed that P. trinervis and P. hopeiensis clustered together as sisters to other Populus species. Taylor & Francis 2020-06-16 /pmc/articles/PMC7782331/ /pubmed/33457829 http://dx.doi.org/10.1080/23802359.2020.1775525 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Liu, Xia
Sun, Chong
Chen, Zheng
Gong, Xia
The complete chloroplast genome sequence of Populus trinervis, and a comparative analysis with other Populus species
title The complete chloroplast genome sequence of Populus trinervis, and a comparative analysis with other Populus species
title_full The complete chloroplast genome sequence of Populus trinervis, and a comparative analysis with other Populus species
title_fullStr The complete chloroplast genome sequence of Populus trinervis, and a comparative analysis with other Populus species
title_full_unstemmed The complete chloroplast genome sequence of Populus trinervis, and a comparative analysis with other Populus species
title_short The complete chloroplast genome sequence of Populus trinervis, and a comparative analysis with other Populus species
title_sort complete chloroplast genome sequence of populus trinervis, and a comparative analysis with other populus species
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782331/
https://www.ncbi.nlm.nih.gov/pubmed/33457829
http://dx.doi.org/10.1080/23802359.2020.1775525
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