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Characterization of the complete chloroplast genome sequence of Koelreuteria bipinnata
Koelreuteria bipinnata is an important ornamental tree with attractive flowers and fruits. In this study, we used next-generation sequencing technology to obtain the complete chloroplast genome of K. bipinnata. The entire genome was determined to be 163,863 bp in size, harboring a typical quadripart...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782333/ https://www.ncbi.nlm.nih.gov/pubmed/33458153 http://dx.doi.org/10.1080/23802359.2020.1806129 |
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author | Lyu, Yunzhou Dong, Xiaoyun Sun, Hainan Huang, Libin |
author_facet | Lyu, Yunzhou Dong, Xiaoyun Sun, Hainan Huang, Libin |
author_sort | Lyu, Yunzhou |
collection | PubMed |
description | Koelreuteria bipinnata is an important ornamental tree with attractive flowers and fruits. In this study, we used next-generation sequencing technology to obtain the complete chloroplast genome of K. bipinnata. The entire genome was determined to be 163,863 bp in size, harboring a typical quadripartite structure with a large single copy (LSC) region of 90,240 bp, a small single copy (SSC) region of 18,883 bp, and a pair of 27,370 bp inverted repeat (IR) regions. The genome was predicted to contain 132 genes, including 84 protein-coding genes, 40 tRNA genes, and 8 rRNA genes. The overall GC content of K. bipinnata chloroplast genome was 37.29%. Phylogenetic analysis based on complete chloroplast genome sequences indicated that K. bipinnata was closely related to K. paniculate. This study would be useful for future population genetics studies and phylogenetic analysis of K. bipinnata. |
format | Online Article Text |
id | pubmed-7782333 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77823332021-01-14 Characterization of the complete chloroplast genome sequence of Koelreuteria bipinnata Lyu, Yunzhou Dong, Xiaoyun Sun, Hainan Huang, Libin Mitochondrial DNA B Resour Mitogenome Announcement Koelreuteria bipinnata is an important ornamental tree with attractive flowers and fruits. In this study, we used next-generation sequencing technology to obtain the complete chloroplast genome of K. bipinnata. The entire genome was determined to be 163,863 bp in size, harboring a typical quadripartite structure with a large single copy (LSC) region of 90,240 bp, a small single copy (SSC) region of 18,883 bp, and a pair of 27,370 bp inverted repeat (IR) regions. The genome was predicted to contain 132 genes, including 84 protein-coding genes, 40 tRNA genes, and 8 rRNA genes. The overall GC content of K. bipinnata chloroplast genome was 37.29%. Phylogenetic analysis based on complete chloroplast genome sequences indicated that K. bipinnata was closely related to K. paniculate. This study would be useful for future population genetics studies and phylogenetic analysis of K. bipinnata. Taylor & Francis 2020-09-08 /pmc/articles/PMC7782333/ /pubmed/33458153 http://dx.doi.org/10.1080/23802359.2020.1806129 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Lyu, Yunzhou Dong, Xiaoyun Sun, Hainan Huang, Libin Characterization of the complete chloroplast genome sequence of Koelreuteria bipinnata |
title | Characterization of the complete chloroplast genome sequence of Koelreuteria bipinnata |
title_full | Characterization of the complete chloroplast genome sequence of Koelreuteria bipinnata |
title_fullStr | Characterization of the complete chloroplast genome sequence of Koelreuteria bipinnata |
title_full_unstemmed | Characterization of the complete chloroplast genome sequence of Koelreuteria bipinnata |
title_short | Characterization of the complete chloroplast genome sequence of Koelreuteria bipinnata |
title_sort | characterization of the complete chloroplast genome sequence of koelreuteria bipinnata |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782333/ https://www.ncbi.nlm.nih.gov/pubmed/33458153 http://dx.doi.org/10.1080/23802359.2020.1806129 |
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