Molecular identification and phylogenetic analysis of a Callosciurus notatus complete mitogenome from Peninsular Malaysia

The mitogenome of a plantain squirrel, Callosciurus notatus, collected from Bukit Tarek Forest Reserve (Extension), Selangor, Malaysia was sequenced using BGISEQ-500RS technology. The 16,582 bp mitogenome consists of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and 1 contro...

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Autores principales: Jahari, Puteri Nur Syahzanani, Mohd Azman, Shahfiz, Munian, Kaviarasu, Ahmad Ruzman, Nor Hazwani, Shamsir, Mohd Shahir, Richter, Stine R., Gilbert, M. Thomas P., Mohd Salleh, Faezah
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782351/
https://www.ncbi.nlm.nih.gov/pubmed/33458034
http://dx.doi.org/10.1080/23802359.2020.1797583
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author Jahari, Puteri Nur Syahzanani
Mohd Azman, Shahfiz
Munian, Kaviarasu
Ahmad Ruzman, Nor Hazwani
Shamsir, Mohd Shahir
Richter, Stine R.
Gilbert, M. Thomas P.
Mohd Salleh, Faezah
author_facet Jahari, Puteri Nur Syahzanani
Mohd Azman, Shahfiz
Munian, Kaviarasu
Ahmad Ruzman, Nor Hazwani
Shamsir, Mohd Shahir
Richter, Stine R.
Gilbert, M. Thomas P.
Mohd Salleh, Faezah
author_sort Jahari, Puteri Nur Syahzanani
collection PubMed
description The mitogenome of a plantain squirrel, Callosciurus notatus, collected from Bukit Tarek Forest Reserve (Extension), Selangor, Malaysia was sequenced using BGISEQ-500RS technology. The 16,582 bp mitogenome consists of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and 1 control region. A phylogenetic and BLASTn analysis against other available datasets showed that the mitogenome matched with 99.49% similarity to a previously published C. notatus mitogenome from Peninsular Malaysia. However, it also diverged by nearly 8% (92.24% match) from a second previously published mitogenome for the same species, sampled in East Kalimantan, Indonesia. This suggests a difference in landscape features between both localities might affect its genetic connectivity.
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spelling pubmed-77823512021-01-14 Molecular identification and phylogenetic analysis of a Callosciurus notatus complete mitogenome from Peninsular Malaysia Jahari, Puteri Nur Syahzanani Mohd Azman, Shahfiz Munian, Kaviarasu Ahmad Ruzman, Nor Hazwani Shamsir, Mohd Shahir Richter, Stine R. Gilbert, M. Thomas P. Mohd Salleh, Faezah Mitochondrial DNA B Resour Mitogenome Announcement The mitogenome of a plantain squirrel, Callosciurus notatus, collected from Bukit Tarek Forest Reserve (Extension), Selangor, Malaysia was sequenced using BGISEQ-500RS technology. The 16,582 bp mitogenome consists of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and 1 control region. A phylogenetic and BLASTn analysis against other available datasets showed that the mitogenome matched with 99.49% similarity to a previously published C. notatus mitogenome from Peninsular Malaysia. However, it also diverged by nearly 8% (92.24% match) from a second previously published mitogenome for the same species, sampled in East Kalimantan, Indonesia. This suggests a difference in landscape features between both localities might affect its genetic connectivity. Taylor & Francis 2020-08-26 /pmc/articles/PMC7782351/ /pubmed/33458034 http://dx.doi.org/10.1080/23802359.2020.1797583 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Jahari, Puteri Nur Syahzanani
Mohd Azman, Shahfiz
Munian, Kaviarasu
Ahmad Ruzman, Nor Hazwani
Shamsir, Mohd Shahir
Richter, Stine R.
Gilbert, M. Thomas P.
Mohd Salleh, Faezah
Molecular identification and phylogenetic analysis of a Callosciurus notatus complete mitogenome from Peninsular Malaysia
title Molecular identification and phylogenetic analysis of a Callosciurus notatus complete mitogenome from Peninsular Malaysia
title_full Molecular identification and phylogenetic analysis of a Callosciurus notatus complete mitogenome from Peninsular Malaysia
title_fullStr Molecular identification and phylogenetic analysis of a Callosciurus notatus complete mitogenome from Peninsular Malaysia
title_full_unstemmed Molecular identification and phylogenetic analysis of a Callosciurus notatus complete mitogenome from Peninsular Malaysia
title_short Molecular identification and phylogenetic analysis of a Callosciurus notatus complete mitogenome from Peninsular Malaysia
title_sort molecular identification and phylogenetic analysis of a callosciurus notatus complete mitogenome from peninsular malaysia
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782351/
https://www.ncbi.nlm.nih.gov/pubmed/33458034
http://dx.doi.org/10.1080/23802359.2020.1797583
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