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The complete chloroplast genomes of two Mexican plants of the annual herb Datura stramonium (Solanaceae)

The annual herb, Datura stramonium, is a member of the Solanaceae family. In this study, we report the chloroplast genomes of two Mexican plants of D. stramonium. Both chloroplast genomes of D. stramonium (GenBank accessions: MT610896 and MT610897) were assembled as a circular molecule. The genome s...

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Autores principales: De-la-Cruz, I. M., Núñez-Farfán, J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782494/
https://www.ncbi.nlm.nih.gov/pubmed/33457963
http://dx.doi.org/10.1080/23802359.2020.1789516
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author De-la-Cruz, I. M.
Núñez-Farfán, J.
author_facet De-la-Cruz, I. M.
Núñez-Farfán, J.
author_sort De-la-Cruz, I. M.
collection PubMed
description The annual herb, Datura stramonium, is a member of the Solanaceae family. In this study, we report the chloroplast genomes of two Mexican plants of D. stramonium. Both chloroplast genomes of D. stramonium (GenBank accessions: MT610896 and MT610897) were assembled as a circular molecule. The genome size of both plants was similar (155,884 bp). The overall GC content was 38.59% for both genomes. Both chloroplast genomes contained 85 protein-coding sequences (CDS), 131 genes, 8 rRNA genes, and 38 tRNA genes. Thirty-nine microsatellites (SSRs) and 42 long tandem repeats were also identified for both genomes. The phylogenetic relationship between D. stramonium and related Solanaceae species revealed four main groups; Nicotiana, Datura, Capsicum, and Solanum clades. This species tree is consistent with other Solanaceae species trees already published.
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spelling pubmed-77824942021-01-14 The complete chloroplast genomes of two Mexican plants of the annual herb Datura stramonium (Solanaceae) De-la-Cruz, I. M. Núñez-Farfán, J. Mitochondrial DNA B Resour Mitogenome Announcement The annual herb, Datura stramonium, is a member of the Solanaceae family. In this study, we report the chloroplast genomes of two Mexican plants of D. stramonium. Both chloroplast genomes of D. stramonium (GenBank accessions: MT610896 and MT610897) were assembled as a circular molecule. The genome size of both plants was similar (155,884 bp). The overall GC content was 38.59% for both genomes. Both chloroplast genomes contained 85 protein-coding sequences (CDS), 131 genes, 8 rRNA genes, and 38 tRNA genes. Thirty-nine microsatellites (SSRs) and 42 long tandem repeats were also identified for both genomes. The phylogenetic relationship between D. stramonium and related Solanaceae species revealed four main groups; Nicotiana, Datura, Capsicum, and Solanum clades. This species tree is consistent with other Solanaceae species trees already published. Taylor & Francis 2020-07-15 /pmc/articles/PMC7782494/ /pubmed/33457963 http://dx.doi.org/10.1080/23802359.2020.1789516 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
De-la-Cruz, I. M.
Núñez-Farfán, J.
The complete chloroplast genomes of two Mexican plants of the annual herb Datura stramonium (Solanaceae)
title The complete chloroplast genomes of two Mexican plants of the annual herb Datura stramonium (Solanaceae)
title_full The complete chloroplast genomes of two Mexican plants of the annual herb Datura stramonium (Solanaceae)
title_fullStr The complete chloroplast genomes of two Mexican plants of the annual herb Datura stramonium (Solanaceae)
title_full_unstemmed The complete chloroplast genomes of two Mexican plants of the annual herb Datura stramonium (Solanaceae)
title_short The complete chloroplast genomes of two Mexican plants of the annual herb Datura stramonium (Solanaceae)
title_sort complete chloroplast genomes of two mexican plants of the annual herb datura stramonium (solanaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782494/
https://www.ncbi.nlm.nih.gov/pubmed/33457963
http://dx.doi.org/10.1080/23802359.2020.1789516
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