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The complete chloroplast genomes of two Mexican plants of the annual herb Datura stramonium (Solanaceae)
The annual herb, Datura stramonium, is a member of the Solanaceae family. In this study, we report the chloroplast genomes of two Mexican plants of D. stramonium. Both chloroplast genomes of D. stramonium (GenBank accessions: MT610896 and MT610897) were assembled as a circular molecule. The genome s...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782494/ https://www.ncbi.nlm.nih.gov/pubmed/33457963 http://dx.doi.org/10.1080/23802359.2020.1789516 |
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author | De-la-Cruz, I. M. Núñez-Farfán, J. |
author_facet | De-la-Cruz, I. M. Núñez-Farfán, J. |
author_sort | De-la-Cruz, I. M. |
collection | PubMed |
description | The annual herb, Datura stramonium, is a member of the Solanaceae family. In this study, we report the chloroplast genomes of two Mexican plants of D. stramonium. Both chloroplast genomes of D. stramonium (GenBank accessions: MT610896 and MT610897) were assembled as a circular molecule. The genome size of both plants was similar (155,884 bp). The overall GC content was 38.59% for both genomes. Both chloroplast genomes contained 85 protein-coding sequences (CDS), 131 genes, 8 rRNA genes, and 38 tRNA genes. Thirty-nine microsatellites (SSRs) and 42 long tandem repeats were also identified for both genomes. The phylogenetic relationship between D. stramonium and related Solanaceae species revealed four main groups; Nicotiana, Datura, Capsicum, and Solanum clades. This species tree is consistent with other Solanaceae species trees already published. |
format | Online Article Text |
id | pubmed-7782494 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77824942021-01-14 The complete chloroplast genomes of two Mexican plants of the annual herb Datura stramonium (Solanaceae) De-la-Cruz, I. M. Núñez-Farfán, J. Mitochondrial DNA B Resour Mitogenome Announcement The annual herb, Datura stramonium, is a member of the Solanaceae family. In this study, we report the chloroplast genomes of two Mexican plants of D. stramonium. Both chloroplast genomes of D. stramonium (GenBank accessions: MT610896 and MT610897) were assembled as a circular molecule. The genome size of both plants was similar (155,884 bp). The overall GC content was 38.59% for both genomes. Both chloroplast genomes contained 85 protein-coding sequences (CDS), 131 genes, 8 rRNA genes, and 38 tRNA genes. Thirty-nine microsatellites (SSRs) and 42 long tandem repeats were also identified for both genomes. The phylogenetic relationship between D. stramonium and related Solanaceae species revealed four main groups; Nicotiana, Datura, Capsicum, and Solanum clades. This species tree is consistent with other Solanaceae species trees already published. Taylor & Francis 2020-07-15 /pmc/articles/PMC7782494/ /pubmed/33457963 http://dx.doi.org/10.1080/23802359.2020.1789516 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement De-la-Cruz, I. M. Núñez-Farfán, J. The complete chloroplast genomes of two Mexican plants of the annual herb Datura stramonium (Solanaceae) |
title | The complete chloroplast genomes of two Mexican plants of the annual herb Datura stramonium (Solanaceae) |
title_full | The complete chloroplast genomes of two Mexican plants of the annual herb Datura stramonium (Solanaceae) |
title_fullStr | The complete chloroplast genomes of two Mexican plants of the annual herb Datura stramonium (Solanaceae) |
title_full_unstemmed | The complete chloroplast genomes of two Mexican plants of the annual herb Datura stramonium (Solanaceae) |
title_short | The complete chloroplast genomes of two Mexican plants of the annual herb Datura stramonium (Solanaceae) |
title_sort | complete chloroplast genomes of two mexican plants of the annual herb datura stramonium (solanaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782494/ https://www.ncbi.nlm.nih.gov/pubmed/33457963 http://dx.doi.org/10.1080/23802359.2020.1789516 |
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