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Fast automated detection of COVID-19 from medical images using convolutional neural networks
Coronavirus disease 2019 (COVID-19) is a global pandemic posing significant health risks. The diagnostic test sensitivity of COVID-19 is limited due to irregularities in specimen handling. We propose a deep learning framework that identifies COVID-19 from medical images as an auxiliary testing metho...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782580/ https://www.ncbi.nlm.nih.gov/pubmed/33398067 http://dx.doi.org/10.1038/s42003-020-01535-7 |
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author | Liang, Shuang Liu, Huixiang Gu, Yu Guo, Xiuhua Li, Hongjun Li, Li Wu, Zhiyuan Liu, Mengyang Tao, Lixin |
author_facet | Liang, Shuang Liu, Huixiang Gu, Yu Guo, Xiuhua Li, Hongjun Li, Li Wu, Zhiyuan Liu, Mengyang Tao, Lixin |
author_sort | Liang, Shuang |
collection | PubMed |
description | Coronavirus disease 2019 (COVID-19) is a global pandemic posing significant health risks. The diagnostic test sensitivity of COVID-19 is limited due to irregularities in specimen handling. We propose a deep learning framework that identifies COVID-19 from medical images as an auxiliary testing method to improve diagnostic sensitivity. We use pseudo-coloring methods and a platform for annotating X-ray and computed tomography images to train the convolutional neural network, which achieves a performance similar to that of experts and provides high scores for multiple statistical indices (F1 scores > 96.72% (0.9307, 0.9890) and specificity >99.33% (0.9792, 1.0000)). Heatmaps are used to visualize the salient features extracted by the neural network. The neural network-based regression provides strong correlations between the lesion areas in the images and five clinical indicators, resulting in high accuracy of the classification framework. The proposed method represents a potential computer-aided diagnosis method for COVID-19 in clinical practice. |
format | Online Article Text |
id | pubmed-7782580 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-77825802021-01-11 Fast automated detection of COVID-19 from medical images using convolutional neural networks Liang, Shuang Liu, Huixiang Gu, Yu Guo, Xiuhua Li, Hongjun Li, Li Wu, Zhiyuan Liu, Mengyang Tao, Lixin Commun Biol Article Coronavirus disease 2019 (COVID-19) is a global pandemic posing significant health risks. The diagnostic test sensitivity of COVID-19 is limited due to irregularities in specimen handling. We propose a deep learning framework that identifies COVID-19 from medical images as an auxiliary testing method to improve diagnostic sensitivity. We use pseudo-coloring methods and a platform for annotating X-ray and computed tomography images to train the convolutional neural network, which achieves a performance similar to that of experts and provides high scores for multiple statistical indices (F1 scores > 96.72% (0.9307, 0.9890) and specificity >99.33% (0.9792, 1.0000)). Heatmaps are used to visualize the salient features extracted by the neural network. The neural network-based regression provides strong correlations between the lesion areas in the images and five clinical indicators, resulting in high accuracy of the classification framework. The proposed method represents a potential computer-aided diagnosis method for COVID-19 in clinical practice. Nature Publishing Group UK 2021-01-04 /pmc/articles/PMC7782580/ /pubmed/33398067 http://dx.doi.org/10.1038/s42003-020-01535-7 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Liang, Shuang Liu, Huixiang Gu, Yu Guo, Xiuhua Li, Hongjun Li, Li Wu, Zhiyuan Liu, Mengyang Tao, Lixin Fast automated detection of COVID-19 from medical images using convolutional neural networks |
title | Fast automated detection of COVID-19 from medical images using convolutional neural networks |
title_full | Fast automated detection of COVID-19 from medical images using convolutional neural networks |
title_fullStr | Fast automated detection of COVID-19 from medical images using convolutional neural networks |
title_full_unstemmed | Fast automated detection of COVID-19 from medical images using convolutional neural networks |
title_short | Fast automated detection of COVID-19 from medical images using convolutional neural networks |
title_sort | fast automated detection of covid-19 from medical images using convolutional neural networks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782580/ https://www.ncbi.nlm.nih.gov/pubmed/33398067 http://dx.doi.org/10.1038/s42003-020-01535-7 |
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