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Fast automated detection of COVID-19 from medical images using convolutional neural networks

Coronavirus disease 2019 (COVID-19) is a global pandemic posing significant health risks. The diagnostic test sensitivity of COVID-19 is limited due to irregularities in specimen handling. We propose a deep learning framework that identifies COVID-19 from medical images as an auxiliary testing metho...

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Autores principales: Liang, Shuang, Liu, Huixiang, Gu, Yu, Guo, Xiuhua, Li, Hongjun, Li, Li, Wu, Zhiyuan, Liu, Mengyang, Tao, Lixin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782580/
https://www.ncbi.nlm.nih.gov/pubmed/33398067
http://dx.doi.org/10.1038/s42003-020-01535-7
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author Liang, Shuang
Liu, Huixiang
Gu, Yu
Guo, Xiuhua
Li, Hongjun
Li, Li
Wu, Zhiyuan
Liu, Mengyang
Tao, Lixin
author_facet Liang, Shuang
Liu, Huixiang
Gu, Yu
Guo, Xiuhua
Li, Hongjun
Li, Li
Wu, Zhiyuan
Liu, Mengyang
Tao, Lixin
author_sort Liang, Shuang
collection PubMed
description Coronavirus disease 2019 (COVID-19) is a global pandemic posing significant health risks. The diagnostic test sensitivity of COVID-19 is limited due to irregularities in specimen handling. We propose a deep learning framework that identifies COVID-19 from medical images as an auxiliary testing method to improve diagnostic sensitivity. We use pseudo-coloring methods and a platform for annotating X-ray and computed tomography images to train the convolutional neural network, which achieves a performance similar to that of experts and provides high scores for multiple statistical indices (F1 scores > 96.72% (0.9307, 0.9890) and specificity >99.33% (0.9792, 1.0000)). Heatmaps are used to visualize the salient features extracted by the neural network. The neural network-based regression provides strong correlations between the lesion areas in the images and five clinical indicators, resulting in high accuracy of the classification framework. The proposed method represents a potential computer-aided diagnosis method for COVID-19 in clinical practice.
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spelling pubmed-77825802021-01-11 Fast automated detection of COVID-19 from medical images using convolutional neural networks Liang, Shuang Liu, Huixiang Gu, Yu Guo, Xiuhua Li, Hongjun Li, Li Wu, Zhiyuan Liu, Mengyang Tao, Lixin Commun Biol Article Coronavirus disease 2019 (COVID-19) is a global pandemic posing significant health risks. The diagnostic test sensitivity of COVID-19 is limited due to irregularities in specimen handling. We propose a deep learning framework that identifies COVID-19 from medical images as an auxiliary testing method to improve diagnostic sensitivity. We use pseudo-coloring methods and a platform for annotating X-ray and computed tomography images to train the convolutional neural network, which achieves a performance similar to that of experts and provides high scores for multiple statistical indices (F1 scores > 96.72% (0.9307, 0.9890) and specificity >99.33% (0.9792, 1.0000)). Heatmaps are used to visualize the salient features extracted by the neural network. The neural network-based regression provides strong correlations between the lesion areas in the images and five clinical indicators, resulting in high accuracy of the classification framework. The proposed method represents a potential computer-aided diagnosis method for COVID-19 in clinical practice. Nature Publishing Group UK 2021-01-04 /pmc/articles/PMC7782580/ /pubmed/33398067 http://dx.doi.org/10.1038/s42003-020-01535-7 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Liang, Shuang
Liu, Huixiang
Gu, Yu
Guo, Xiuhua
Li, Hongjun
Li, Li
Wu, Zhiyuan
Liu, Mengyang
Tao, Lixin
Fast automated detection of COVID-19 from medical images using convolutional neural networks
title Fast automated detection of COVID-19 from medical images using convolutional neural networks
title_full Fast automated detection of COVID-19 from medical images using convolutional neural networks
title_fullStr Fast automated detection of COVID-19 from medical images using convolutional neural networks
title_full_unstemmed Fast automated detection of COVID-19 from medical images using convolutional neural networks
title_short Fast automated detection of COVID-19 from medical images using convolutional neural networks
title_sort fast automated detection of covid-19 from medical images using convolutional neural networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782580/
https://www.ncbi.nlm.nih.gov/pubmed/33398067
http://dx.doi.org/10.1038/s42003-020-01535-7
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