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The complete chloroplast genome of Cymbidium longibracteatum (Orchidaceae) and phylogenetic analysis
Cymbidium longibracteatum is a common cultivated species in the genus Cymbidium due to its elegant appearance, rich flower colors and strong fragrance, but its classification is quite controversial. In this study, the complete chloroplast genome of C. longibracteatum was obtained by Illumina sequenc...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782654/ https://www.ncbi.nlm.nih.gov/pubmed/33458006 http://dx.doi.org/10.1080/23802359.2020.1780968 |
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author | Ning, Huijuan Shao, Lei Dai, Silan |
author_facet | Ning, Huijuan Shao, Lei Dai, Silan |
author_sort | Ning, Huijuan |
collection | PubMed |
description | Cymbidium longibracteatum is a common cultivated species in the genus Cymbidium due to its elegant appearance, rich flower colors and strong fragrance, but its classification is quite controversial. In this study, the complete chloroplast genome of C. longibracteatum was obtained by Illumina sequencing. The chloroplast genome of C. longibracteatum is 150,070 bp in length with an overall GC content of 37.12%, which contains a large single-copy (LSC;84,949 bp) region, a small single-copy (SSC;13,745bp) region, and a pair of inverted repeats (IRs; 25,688 bp) regions. The genome contains 130 genes, namely 84 protein-coding genes, 38 tRNA genes and 8 rRNA genes. The maximum-likelihood phylogenetic tree has proved that C. longibracteatum should exist as an independent species in the genus Cymbidium, and it is most closely related to C. tortisepalum. This study provides valuable sequence resources for further study of C. longibracteatum. |
format | Online Article Text |
id | pubmed-7782654 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77826542021-01-14 The complete chloroplast genome of Cymbidium longibracteatum (Orchidaceae) and phylogenetic analysis Ning, Huijuan Shao, Lei Dai, Silan Mitochondrial DNA B Resour Mitogenome Announcement Cymbidium longibracteatum is a common cultivated species in the genus Cymbidium due to its elegant appearance, rich flower colors and strong fragrance, but its classification is quite controversial. In this study, the complete chloroplast genome of C. longibracteatum was obtained by Illumina sequencing. The chloroplast genome of C. longibracteatum is 150,070 bp in length with an overall GC content of 37.12%, which contains a large single-copy (LSC;84,949 bp) region, a small single-copy (SSC;13,745bp) region, and a pair of inverted repeats (IRs; 25,688 bp) regions. The genome contains 130 genes, namely 84 protein-coding genes, 38 tRNA genes and 8 rRNA genes. The maximum-likelihood phylogenetic tree has proved that C. longibracteatum should exist as an independent species in the genus Cymbidium, and it is most closely related to C. tortisepalum. This study provides valuable sequence resources for further study of C. longibracteatum. Taylor & Francis 2020-07-23 /pmc/articles/PMC7782654/ /pubmed/33458006 http://dx.doi.org/10.1080/23802359.2020.1780968 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Ning, Huijuan Shao, Lei Dai, Silan The complete chloroplast genome of Cymbidium longibracteatum (Orchidaceae) and phylogenetic analysis |
title | The complete chloroplast genome of Cymbidium longibracteatum (Orchidaceae) and phylogenetic analysis |
title_full | The complete chloroplast genome of Cymbidium longibracteatum (Orchidaceae) and phylogenetic analysis |
title_fullStr | The complete chloroplast genome of Cymbidium longibracteatum (Orchidaceae) and phylogenetic analysis |
title_full_unstemmed | The complete chloroplast genome of Cymbidium longibracteatum (Orchidaceae) and phylogenetic analysis |
title_short | The complete chloroplast genome of Cymbidium longibracteatum (Orchidaceae) and phylogenetic analysis |
title_sort | complete chloroplast genome of cymbidium longibracteatum (orchidaceae) and phylogenetic analysis |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782654/ https://www.ncbi.nlm.nih.gov/pubmed/33458006 http://dx.doi.org/10.1080/23802359.2020.1780968 |
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