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The complete chloroplast genome of Musa acuminata var. chinensis
Musa acuminata var. chinensis is one of the most important wild banana species native to China which has huge potential breeding value by its cold tolerance and disease resistance. In this study, we first reported the complete chloroplast genome of M. acuminata var. chinensis and explore its phyloge...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782695/ https://www.ncbi.nlm.nih.gov/pubmed/33457907 http://dx.doi.org/10.1080/23802359.2020.1788462 |
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author | Feng, Huimin Chen, You Xu, Xiaoxiong Luo, Hongli Wu, Yaoting He, Chaozu |
author_facet | Feng, Huimin Chen, You Xu, Xiaoxiong Luo, Hongli Wu, Yaoting He, Chaozu |
author_sort | Feng, Huimin |
collection | PubMed |
description | Musa acuminata var. chinensis is one of the most important wild banana species native to China which has huge potential breeding value by its cold tolerance and disease resistance. In this study, we first reported the complete chloroplast genome of M. acuminata var. chinensis and explore its phylogenetic position using a maximum likelihood phylogenetic tree. The chloroplast genome of M. acuminata var. chinensis is 170,402 bp in length and the overall GC content of the whole genome is 36.8%. It consisting of a pair of inverted repeat (IR, 35,320 bp) regions, a large single-copy (LSC, 88,870 bp) and a small single-copy (SSC, 10,900 bp). The chloroplast genome contained 112 genes, including 79 protein-coding genes, 29 tRNA genes, and 4 rRNA ribosomal genes. The most genes occur as a single copy, while 23 gene species occur in double copies. Phylogenetic analysis of 7 selected chloroplast genomes revealed that M. acuminata var. chinensis was closely related to M. acuminata ssp. malaccensis. The complete chloroplast genome of M. acuminata var. chinensis will greatly enhance precious gene resources for banana breeding programs in the future. |
format | Online Article Text |
id | pubmed-7782695 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77826952021-01-14 The complete chloroplast genome of Musa acuminata var. chinensis Feng, Huimin Chen, You Xu, Xiaoxiong Luo, Hongli Wu, Yaoting He, Chaozu Mitochondrial DNA B Resour Mitogenome Announcement Musa acuminata var. chinensis is one of the most important wild banana species native to China which has huge potential breeding value by its cold tolerance and disease resistance. In this study, we first reported the complete chloroplast genome of M. acuminata var. chinensis and explore its phylogenetic position using a maximum likelihood phylogenetic tree. The chloroplast genome of M. acuminata var. chinensis is 170,402 bp in length and the overall GC content of the whole genome is 36.8%. It consisting of a pair of inverted repeat (IR, 35,320 bp) regions, a large single-copy (LSC, 88,870 bp) and a small single-copy (SSC, 10,900 bp). The chloroplast genome contained 112 genes, including 79 protein-coding genes, 29 tRNA genes, and 4 rRNA ribosomal genes. The most genes occur as a single copy, while 23 gene species occur in double copies. Phylogenetic analysis of 7 selected chloroplast genomes revealed that M. acuminata var. chinensis was closely related to M. acuminata ssp. malaccensis. The complete chloroplast genome of M. acuminata var. chinensis will greatly enhance precious gene resources for banana breeding programs in the future. Taylor & Francis 2020-07-07 /pmc/articles/PMC7782695/ /pubmed/33457907 http://dx.doi.org/10.1080/23802359.2020.1788462 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Feng, Huimin Chen, You Xu, Xiaoxiong Luo, Hongli Wu, Yaoting He, Chaozu The complete chloroplast genome of Musa acuminata var. chinensis |
title | The complete chloroplast genome of Musa acuminata var. chinensis |
title_full | The complete chloroplast genome of Musa acuminata var. chinensis |
title_fullStr | The complete chloroplast genome of Musa acuminata var. chinensis |
title_full_unstemmed | The complete chloroplast genome of Musa acuminata var. chinensis |
title_short | The complete chloroplast genome of Musa acuminata var. chinensis |
title_sort | complete chloroplast genome of musa acuminata var. chinensis |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782695/ https://www.ncbi.nlm.nih.gov/pubmed/33457907 http://dx.doi.org/10.1080/23802359.2020.1788462 |
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