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The complete chloroplast genome of Prunus domestica L. (Rosaceae) and its phylogenetic implication

Prunus domestica commonly known as European plum is one of the most important wild fruit tree resources, and up to date, its wild community has only been found to be distributed in wild fruit forest area of the Tianshan Mountainsin Ili region of Xinjiang, China. Despite its agricultural importance a...

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Autores principales: Geng, Wenjuan, Ouyang, Liting, Xu, Min, Jing, Jianyong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782716/
https://www.ncbi.nlm.nih.gov/pubmed/33457948
http://dx.doi.org/10.1080/23802359.2020.1768928
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author Geng, Wenjuan
Ouyang, Liting
Xu, Min
Jing, Jianyong
author_facet Geng, Wenjuan
Ouyang, Liting
Xu, Min
Jing, Jianyong
author_sort Geng, Wenjuan
collection PubMed
description Prunus domestica commonly known as European plum is one of the most important wild fruit tree resources, and up to date, its wild community has only been found to be distributed in wild fruit forest area of the Tianshan Mountainsin Ili region of Xinjiang, China. Despite its agricultural importance and long history of cultivation, many questions remain about the origin of this species, due to absence of genome data. In this study, the complete chloroplast (cp) genome sequence of P. domestica was determined using next-generation sequencing. The entire cp genome was determined to be 157,395 bp in length. It contained large single-copy (LSC) and small single-copy (SSC) regions of 85,744 and 18,949 bp, respectively, which were separated by a pair of 26,351 bp inverted repeat (IR) regions. The genome contained 130 genes, including 85 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The overall GC content of the genome is 36.8%. A phylogenetic tree reconstructed by 39 chloroplast genomes reveals that P. domestica is most closely related to Prunus salicina.
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spelling pubmed-77827162021-01-14 The complete chloroplast genome of Prunus domestica L. (Rosaceae) and its phylogenetic implication Geng, Wenjuan Ouyang, Liting Xu, Min Jing, Jianyong Mitochondrial DNA B Resour MitoGenome Announcement Prunus domestica commonly known as European plum is one of the most important wild fruit tree resources, and up to date, its wild community has only been found to be distributed in wild fruit forest area of the Tianshan Mountainsin Ili region of Xinjiang, China. Despite its agricultural importance and long history of cultivation, many questions remain about the origin of this species, due to absence of genome data. In this study, the complete chloroplast (cp) genome sequence of P. domestica was determined using next-generation sequencing. The entire cp genome was determined to be 157,395 bp in length. It contained large single-copy (LSC) and small single-copy (SSC) regions of 85,744 and 18,949 bp, respectively, which were separated by a pair of 26,351 bp inverted repeat (IR) regions. The genome contained 130 genes, including 85 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The overall GC content of the genome is 36.8%. A phylogenetic tree reconstructed by 39 chloroplast genomes reveals that P. domestica is most closely related to Prunus salicina. Taylor & Francis 2020-07-14 /pmc/articles/PMC7782716/ /pubmed/33457948 http://dx.doi.org/10.1080/23802359.2020.1768928 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle MitoGenome Announcement
Geng, Wenjuan
Ouyang, Liting
Xu, Min
Jing, Jianyong
The complete chloroplast genome of Prunus domestica L. (Rosaceae) and its phylogenetic implication
title The complete chloroplast genome of Prunus domestica L. (Rosaceae) and its phylogenetic implication
title_full The complete chloroplast genome of Prunus domestica L. (Rosaceae) and its phylogenetic implication
title_fullStr The complete chloroplast genome of Prunus domestica L. (Rosaceae) and its phylogenetic implication
title_full_unstemmed The complete chloroplast genome of Prunus domestica L. (Rosaceae) and its phylogenetic implication
title_short The complete chloroplast genome of Prunus domestica L. (Rosaceae) and its phylogenetic implication
title_sort complete chloroplast genome of prunus domestica l. (rosaceae) and its phylogenetic implication
topic MitoGenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782716/
https://www.ncbi.nlm.nih.gov/pubmed/33457948
http://dx.doi.org/10.1080/23802359.2020.1768928
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