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The complete chloroplast genome sequence of Malus toringo (Rosaceae)

Malus toringo (Siebold) Siebold ex de Vriese is a worthy species in the genus Malus (family Rosaceae) distributing from North America and Asia, especially in China. In addition to its ornamental value, the medicinal value of its fruits has also been developed to treat food stagnation diseases. Herei...

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Autores principales: Li, Yanan, Liu, Yanlei, Xu, Chao, Li, Fengyi, Wang, Ling, Zhou, Shiliang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782744/
https://www.ncbi.nlm.nih.gov/pubmed/33457964
http://dx.doi.org/10.1080/23802359.2020.1790317
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author Li, Yanan
Liu, Yanlei
Xu, Chao
Li, Fengyi
Wang, Ling
Zhou, Shiliang
author_facet Li, Yanan
Liu, Yanlei
Xu, Chao
Li, Fengyi
Wang, Ling
Zhou, Shiliang
author_sort Li, Yanan
collection PubMed
description Malus toringo (Siebold) Siebold ex de Vriese is a worthy species in the genus Malus (family Rosaceae) distributing from North America and Asia, especially in China. In addition to its ornamental value, the medicinal value of its fruits has also been developed to treat food stagnation diseases. Herein, we obtained the complete chloroplast genome of M. toringo using next-generation sequencing technology. The complete chloroplast genome is 160,039 base pair (bp) in length, including a large single copy (LSC) region of 88,142 bp, a small single copy (SSC) region of 19,183 bp, and a pair of inverted repeat regions (IRs, 26,357 bp). And, the overall GC content of the chloroplast genome was 36.6%. Besides, a total of 128 unique genes were found in the chloroplast genome, namely 83 protein-coding genes (PCGs), 37 tRNA genes (tRNA), and eight rRNA genes (rRNA). A maximum-likelihood phylogenetic tree was reconstructed using the full length of chloroplast genome to show the phylogenetic relationships among species in genus Malus. It was concluded that M. toringo was phylogenetically close to M. angustifolia.
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spelling pubmed-77827442021-01-14 The complete chloroplast genome sequence of Malus toringo (Rosaceae) Li, Yanan Liu, Yanlei Xu, Chao Li, Fengyi Wang, Ling Zhou, Shiliang Mitochondrial DNA B Resour Mitogenome Announcement Malus toringo (Siebold) Siebold ex de Vriese is a worthy species in the genus Malus (family Rosaceae) distributing from North America and Asia, especially in China. In addition to its ornamental value, the medicinal value of its fruits has also been developed to treat food stagnation diseases. Herein, we obtained the complete chloroplast genome of M. toringo using next-generation sequencing technology. The complete chloroplast genome is 160,039 base pair (bp) in length, including a large single copy (LSC) region of 88,142 bp, a small single copy (SSC) region of 19,183 bp, and a pair of inverted repeat regions (IRs, 26,357 bp). And, the overall GC content of the chloroplast genome was 36.6%. Besides, a total of 128 unique genes were found in the chloroplast genome, namely 83 protein-coding genes (PCGs), 37 tRNA genes (tRNA), and eight rRNA genes (rRNA). A maximum-likelihood phylogenetic tree was reconstructed using the full length of chloroplast genome to show the phylogenetic relationships among species in genus Malus. It was concluded that M. toringo was phylogenetically close to M. angustifolia. Taylor & Francis 2020-07-15 /pmc/articles/PMC7782744/ /pubmed/33457964 http://dx.doi.org/10.1080/23802359.2020.1790317 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Li, Yanan
Liu, Yanlei
Xu, Chao
Li, Fengyi
Wang, Ling
Zhou, Shiliang
The complete chloroplast genome sequence of Malus toringo (Rosaceae)
title The complete chloroplast genome sequence of Malus toringo (Rosaceae)
title_full The complete chloroplast genome sequence of Malus toringo (Rosaceae)
title_fullStr The complete chloroplast genome sequence of Malus toringo (Rosaceae)
title_full_unstemmed The complete chloroplast genome sequence of Malus toringo (Rosaceae)
title_short The complete chloroplast genome sequence of Malus toringo (Rosaceae)
title_sort complete chloroplast genome sequence of malus toringo (rosaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782744/
https://www.ncbi.nlm.nih.gov/pubmed/33457964
http://dx.doi.org/10.1080/23802359.2020.1790317
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