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The complete chloroplast genome sequence of Malus toringo (Rosaceae)
Malus toringo (Siebold) Siebold ex de Vriese is a worthy species in the genus Malus (family Rosaceae) distributing from North America and Asia, especially in China. In addition to its ornamental value, the medicinal value of its fruits has also been developed to treat food stagnation diseases. Herei...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782744/ https://www.ncbi.nlm.nih.gov/pubmed/33457964 http://dx.doi.org/10.1080/23802359.2020.1790317 |
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author | Li, Yanan Liu, Yanlei Xu, Chao Li, Fengyi Wang, Ling Zhou, Shiliang |
author_facet | Li, Yanan Liu, Yanlei Xu, Chao Li, Fengyi Wang, Ling Zhou, Shiliang |
author_sort | Li, Yanan |
collection | PubMed |
description | Malus toringo (Siebold) Siebold ex de Vriese is a worthy species in the genus Malus (family Rosaceae) distributing from North America and Asia, especially in China. In addition to its ornamental value, the medicinal value of its fruits has also been developed to treat food stagnation diseases. Herein, we obtained the complete chloroplast genome of M. toringo using next-generation sequencing technology. The complete chloroplast genome is 160,039 base pair (bp) in length, including a large single copy (LSC) region of 88,142 bp, a small single copy (SSC) region of 19,183 bp, and a pair of inverted repeat regions (IRs, 26,357 bp). And, the overall GC content of the chloroplast genome was 36.6%. Besides, a total of 128 unique genes were found in the chloroplast genome, namely 83 protein-coding genes (PCGs), 37 tRNA genes (tRNA), and eight rRNA genes (rRNA). A maximum-likelihood phylogenetic tree was reconstructed using the full length of chloroplast genome to show the phylogenetic relationships among species in genus Malus. It was concluded that M. toringo was phylogenetically close to M. angustifolia. |
format | Online Article Text |
id | pubmed-7782744 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77827442021-01-14 The complete chloroplast genome sequence of Malus toringo (Rosaceae) Li, Yanan Liu, Yanlei Xu, Chao Li, Fengyi Wang, Ling Zhou, Shiliang Mitochondrial DNA B Resour Mitogenome Announcement Malus toringo (Siebold) Siebold ex de Vriese is a worthy species in the genus Malus (family Rosaceae) distributing from North America and Asia, especially in China. In addition to its ornamental value, the medicinal value of its fruits has also been developed to treat food stagnation diseases. Herein, we obtained the complete chloroplast genome of M. toringo using next-generation sequencing technology. The complete chloroplast genome is 160,039 base pair (bp) in length, including a large single copy (LSC) region of 88,142 bp, a small single copy (SSC) region of 19,183 bp, and a pair of inverted repeat regions (IRs, 26,357 bp). And, the overall GC content of the chloroplast genome was 36.6%. Besides, a total of 128 unique genes were found in the chloroplast genome, namely 83 protein-coding genes (PCGs), 37 tRNA genes (tRNA), and eight rRNA genes (rRNA). A maximum-likelihood phylogenetic tree was reconstructed using the full length of chloroplast genome to show the phylogenetic relationships among species in genus Malus. It was concluded that M. toringo was phylogenetically close to M. angustifolia. Taylor & Francis 2020-07-15 /pmc/articles/PMC7782744/ /pubmed/33457964 http://dx.doi.org/10.1080/23802359.2020.1790317 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Li, Yanan Liu, Yanlei Xu, Chao Li, Fengyi Wang, Ling Zhou, Shiliang The complete chloroplast genome sequence of Malus toringo (Rosaceae) |
title | The complete chloroplast genome sequence of Malus toringo (Rosaceae) |
title_full | The complete chloroplast genome sequence of Malus toringo (Rosaceae) |
title_fullStr | The complete chloroplast genome sequence of Malus toringo (Rosaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Malus toringo (Rosaceae) |
title_short | The complete chloroplast genome sequence of Malus toringo (Rosaceae) |
title_sort | complete chloroplast genome sequence of malus toringo (rosaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782744/ https://www.ncbi.nlm.nih.gov/pubmed/33457964 http://dx.doi.org/10.1080/23802359.2020.1790317 |
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