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The complete chloroplast genome of Akebia trifoliata subsp. australis (Lardizabalaceae), a medicinal plant in China
Akebia trifoliata subsp. australis (Diels) T.Shimizu is a medicinal plant in China. Here, the complete chloroplast (cp) genome sequence of A. trifoliata subsp. australis was assembled and characterized as a resource for future genetic studies. The whole cp genome was 157,952 bp in length, containing...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782757/ https://www.ncbi.nlm.nih.gov/pubmed/33458157 http://dx.doi.org/10.1080/23802359.2020.1820398 |
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author | Yu, Aqiao Tan, Qi Chen, Jing Huang, Hui |
author_facet | Yu, Aqiao Tan, Qi Chen, Jing Huang, Hui |
author_sort | Yu, Aqiao |
collection | PubMed |
description | Akebia trifoliata subsp. australis (Diels) T.Shimizu is a medicinal plant in China. Here, the complete chloroplast (cp) genome sequence of A. trifoliata subsp. australis was assembled and characterized as a resource for future genetic studies. The whole cp genome was 157,952 bp in length, containing of a large single-copy (LSC) region of 86,596 bp, a small single-copy (SSC) region of 19,060 bp, and two inverted repeat (IR) regions of 26,148 bp. The new sequence possessed total 113 unique genes, including 79 protein-coding genes, 30 tRNA genes and 4 rRNA genes. The nucleotide composition was asymmetric (30.3% A, 19.7% C, 19.0% G and 31.0% T) with an overall GC content of 38.7%. The maximum likelihood phylogenetic analysis based on 10 cp genomes indicated that A. trifoliata subsp. australis was closely related to Akebia trifoliata subsp. trifoliata. However, Akebia quinata was closely related to Stauntonia obovatifoliola. |
format | Online Article Text |
id | pubmed-7782757 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77827572021-01-14 The complete chloroplast genome of Akebia trifoliata subsp. australis (Lardizabalaceae), a medicinal plant in China Yu, Aqiao Tan, Qi Chen, Jing Huang, Hui Mitochondrial DNA B Resour Mitogenome Announcement Akebia trifoliata subsp. australis (Diels) T.Shimizu is a medicinal plant in China. Here, the complete chloroplast (cp) genome sequence of A. trifoliata subsp. australis was assembled and characterized as a resource for future genetic studies. The whole cp genome was 157,952 bp in length, containing of a large single-copy (LSC) region of 86,596 bp, a small single-copy (SSC) region of 19,060 bp, and two inverted repeat (IR) regions of 26,148 bp. The new sequence possessed total 113 unique genes, including 79 protein-coding genes, 30 tRNA genes and 4 rRNA genes. The nucleotide composition was asymmetric (30.3% A, 19.7% C, 19.0% G and 31.0% T) with an overall GC content of 38.7%. The maximum likelihood phylogenetic analysis based on 10 cp genomes indicated that A. trifoliata subsp. australis was closely related to Akebia trifoliata subsp. trifoliata. However, Akebia quinata was closely related to Stauntonia obovatifoliola. Taylor & Francis 2020-09-16 /pmc/articles/PMC7782757/ /pubmed/33458157 http://dx.doi.org/10.1080/23802359.2020.1820398 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Yu, Aqiao Tan, Qi Chen, Jing Huang, Hui The complete chloroplast genome of Akebia trifoliata subsp. australis (Lardizabalaceae), a medicinal plant in China |
title | The complete chloroplast genome of Akebia trifoliata subsp. australis (Lardizabalaceae), a medicinal plant in China |
title_full | The complete chloroplast genome of Akebia trifoliata subsp. australis (Lardizabalaceae), a medicinal plant in China |
title_fullStr | The complete chloroplast genome of Akebia trifoliata subsp. australis (Lardizabalaceae), a medicinal plant in China |
title_full_unstemmed | The complete chloroplast genome of Akebia trifoliata subsp. australis (Lardizabalaceae), a medicinal plant in China |
title_short | The complete chloroplast genome of Akebia trifoliata subsp. australis (Lardizabalaceae), a medicinal plant in China |
title_sort | complete chloroplast genome of akebia trifoliata subsp. australis (lardizabalaceae), a medicinal plant in china |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782757/ https://www.ncbi.nlm.nih.gov/pubmed/33458157 http://dx.doi.org/10.1080/23802359.2020.1820398 |
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