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The complete chloroplast genome of Catalpa speciosa (Warder) Engelmann (Bignoniaceae)

Catalpa speciosa (Warder) Engelm. is a precious Catalpa tree widely used as a large ornamental shade tree. In this study, the complete chloroplast genome was assembled from Illumina sequencing data. The completed plastome was 158,239 bp in length, including a large single copy (LSC) region of 85,036...

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Autores principales: Ma, Qing-guo, Zhang, Jian-guo, Zhang, Jun-pei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782859/
https://www.ncbi.nlm.nih.gov/pubmed/33457754
http://dx.doi.org/10.1080/23802359.2020.1765213
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author Ma, Qing-guo
Zhang, Jian-guo
Zhang, Jun-pei
author_facet Ma, Qing-guo
Zhang, Jian-guo
Zhang, Jun-pei
author_sort Ma, Qing-guo
collection PubMed
description Catalpa speciosa (Warder) Engelm. is a precious Catalpa tree widely used as a large ornamental shade tree. In this study, the complete chloroplast genome was assembled from Illumina sequencing data. The completed plastome was 158,239 bp in length, including a large single copy (LSC) region of 85,036 bp, a small single copy (SSC) region of 12,639 bp, and a pair of inverted repeat (IR) regions of 30,282 bp. The overall GC content of the genome was 38.09%, and the corresponding values of the LSC, SSC and IR regions were 36.44%, 33.57%, and 41.35%, respectively. A total of 129 genes were annotated, including 83 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Phylogenetic analysis was carried out based on complete plastome sequences of C. speciose and 11 other species from Bignoniaceae family. The newly characterized complete chloroplast genome will provide essential data for further studies of C. speciosa.
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spelling pubmed-77828592021-01-14 The complete chloroplast genome of Catalpa speciosa (Warder) Engelmann (Bignoniaceae) Ma, Qing-guo Zhang, Jian-guo Zhang, Jun-pei Mitochondrial DNA B Resour Mitogenome Announcement Catalpa speciosa (Warder) Engelm. is a precious Catalpa tree widely used as a large ornamental shade tree. In this study, the complete chloroplast genome was assembled from Illumina sequencing data. The completed plastome was 158,239 bp in length, including a large single copy (LSC) region of 85,036 bp, a small single copy (SSC) region of 12,639 bp, and a pair of inverted repeat (IR) regions of 30,282 bp. The overall GC content of the genome was 38.09%, and the corresponding values of the LSC, SSC and IR regions were 36.44%, 33.57%, and 41.35%, respectively. A total of 129 genes were annotated, including 83 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Phylogenetic analysis was carried out based on complete plastome sequences of C. speciose and 11 other species from Bignoniaceae family. The newly characterized complete chloroplast genome will provide essential data for further studies of C. speciosa. Taylor & Francis 2020-05-14 /pmc/articles/PMC7782859/ /pubmed/33457754 http://dx.doi.org/10.1080/23802359.2020.1765213 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Ma, Qing-guo
Zhang, Jian-guo
Zhang, Jun-pei
The complete chloroplast genome of Catalpa speciosa (Warder) Engelmann (Bignoniaceae)
title The complete chloroplast genome of Catalpa speciosa (Warder) Engelmann (Bignoniaceae)
title_full The complete chloroplast genome of Catalpa speciosa (Warder) Engelmann (Bignoniaceae)
title_fullStr The complete chloroplast genome of Catalpa speciosa (Warder) Engelmann (Bignoniaceae)
title_full_unstemmed The complete chloroplast genome of Catalpa speciosa (Warder) Engelmann (Bignoniaceae)
title_short The complete chloroplast genome of Catalpa speciosa (Warder) Engelmann (Bignoniaceae)
title_sort complete chloroplast genome of catalpa speciosa (warder) engelmann (bignoniaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782859/
https://www.ncbi.nlm.nih.gov/pubmed/33457754
http://dx.doi.org/10.1080/23802359.2020.1765213
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