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The complete chloroplast genome of Catalpa speciosa (Warder) Engelmann (Bignoniaceae)
Catalpa speciosa (Warder) Engelm. is a precious Catalpa tree widely used as a large ornamental shade tree. In this study, the complete chloroplast genome was assembled from Illumina sequencing data. The completed plastome was 158,239 bp in length, including a large single copy (LSC) region of 85,036...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782859/ https://www.ncbi.nlm.nih.gov/pubmed/33457754 http://dx.doi.org/10.1080/23802359.2020.1765213 |
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author | Ma, Qing-guo Zhang, Jian-guo Zhang, Jun-pei |
author_facet | Ma, Qing-guo Zhang, Jian-guo Zhang, Jun-pei |
author_sort | Ma, Qing-guo |
collection | PubMed |
description | Catalpa speciosa (Warder) Engelm. is a precious Catalpa tree widely used as a large ornamental shade tree. In this study, the complete chloroplast genome was assembled from Illumina sequencing data. The completed plastome was 158,239 bp in length, including a large single copy (LSC) region of 85,036 bp, a small single copy (SSC) region of 12,639 bp, and a pair of inverted repeat (IR) regions of 30,282 bp. The overall GC content of the genome was 38.09%, and the corresponding values of the LSC, SSC and IR regions were 36.44%, 33.57%, and 41.35%, respectively. A total of 129 genes were annotated, including 83 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Phylogenetic analysis was carried out based on complete plastome sequences of C. speciose and 11 other species from Bignoniaceae family. The newly characterized complete chloroplast genome will provide essential data for further studies of C. speciosa. |
format | Online Article Text |
id | pubmed-7782859 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77828592021-01-14 The complete chloroplast genome of Catalpa speciosa (Warder) Engelmann (Bignoniaceae) Ma, Qing-guo Zhang, Jian-guo Zhang, Jun-pei Mitochondrial DNA B Resour Mitogenome Announcement Catalpa speciosa (Warder) Engelm. is a precious Catalpa tree widely used as a large ornamental shade tree. In this study, the complete chloroplast genome was assembled from Illumina sequencing data. The completed plastome was 158,239 bp in length, including a large single copy (LSC) region of 85,036 bp, a small single copy (SSC) region of 12,639 bp, and a pair of inverted repeat (IR) regions of 30,282 bp. The overall GC content of the genome was 38.09%, and the corresponding values of the LSC, SSC and IR regions were 36.44%, 33.57%, and 41.35%, respectively. A total of 129 genes were annotated, including 83 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Phylogenetic analysis was carried out based on complete plastome sequences of C. speciose and 11 other species from Bignoniaceae family. The newly characterized complete chloroplast genome will provide essential data for further studies of C. speciosa. Taylor & Francis 2020-05-14 /pmc/articles/PMC7782859/ /pubmed/33457754 http://dx.doi.org/10.1080/23802359.2020.1765213 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Ma, Qing-guo Zhang, Jian-guo Zhang, Jun-pei The complete chloroplast genome of Catalpa speciosa (Warder) Engelmann (Bignoniaceae) |
title | The complete chloroplast genome of Catalpa speciosa (Warder) Engelmann (Bignoniaceae) |
title_full | The complete chloroplast genome of Catalpa speciosa (Warder) Engelmann (Bignoniaceae) |
title_fullStr | The complete chloroplast genome of Catalpa speciosa (Warder) Engelmann (Bignoniaceae) |
title_full_unstemmed | The complete chloroplast genome of Catalpa speciosa (Warder) Engelmann (Bignoniaceae) |
title_short | The complete chloroplast genome of Catalpa speciosa (Warder) Engelmann (Bignoniaceae) |
title_sort | complete chloroplast genome of catalpa speciosa (warder) engelmann (bignoniaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782859/ https://www.ncbi.nlm.nih.gov/pubmed/33457754 http://dx.doi.org/10.1080/23802359.2020.1765213 |
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